Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_020904.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq13 253 3e-64 >seq13 Length=57673148 Score = 253 bits (280), Expect = 3e-64 Identities = 333/459 (73%), Gaps = 2/459 (0%) Strand=Plus/Minus Query 62 GATGGTGCTTCACCATCAATAATCCTACTCCGGAGGAGGAGGATGCCGTGAAGAACCTTG 121 ||||||||||||| |||||||| || || ||| |||||||| || |||||| || | Sbjct 46569995 GATGGTGCTTCACAATCAATAACCCCACAGCGGCTGAGGAGGACGCAGTGAAGGGACTCG 46569936 Query 122 CGCCGGACGCTAAGTACTTAATCTGTGGCCGGGAGGTTGGGGAGAGCGGGACCCCGCATC 181 | | |||||||||||| | || || ||||||||||| ||||| | |||||||| || | Sbjct 46569935 CTCAGGACGCTAAGTATCTGATATGCGGCCGGGAGGTGGGGGAACGGGGGACCCCCCACC 46569876 Query 182 TCCAGGGCTTTGTCAACCTGAAGCGAACCACCCGTATGGGAGCTCTTAAGGCACGGTTGG 241 | ||||||||||| || ||| | || | || |||||||| || ||| || ||| Sbjct 46569875 TTCAGGGCTTTGTGAATTTGAGGAAGACAATTCGGATGGGAGCCCTGAAGCAGAGGCTGG 46569816 Query 242 GTGGTCGCGGACATTTTGAGCCTGCTCGGGGGGATGACTGCTCAAACCGGGACTATTGTT 301 | || ||||| ||||||||| || || || || |||||||| || |||||||| || | Sbjct 46569815 GGGGACGCGGCCATTTTGAGGTAGCCCGAGGTGACGACTGCTCGAATCGGGACTACTGCT 46569756 Query 302 CTAAGGGGGGCGACCTGTTGATTGAGTCTGGGGAACCT-AGTAGTCAAGGAAAACGAAAT 360 | || ||||| |||||| |||||||| ||| ||||| || || |||| | ||| | Sbjct 46569755 CAAAAGGGGGGGACCTGCTGATTGAGCATGGTGAACCCCAGAAGAAGGGGAAGAGGAA-T 46569697 Query 361 GACTTACATGATGCTGTTGTGAAACTGAAAGAGACGAAGAGCCTTGCCGCTGTCGCGTCT 420 |||||||||||||| | || ||| || ||||| || || || || | Sbjct 46569696 GACTTACATGATGCCTTGCAGACTTTGAGTTCCACCAAGAGTCTCGCGAGAGTTGCTGCC 46569637 Query 421 GCGTATCCGGAGACCTACGTCAAATACTCGCGAGGCTTGCGAGAGCTGCTCCTTATATCT 480 || | || ||||| ||||| || || |||||| | | ||||| ||||| Sbjct 46569636 GCTCACCCAGAGACGTACGTGAAGTATCACCGAGGCCTCGCCGCTCTGCTACTTATGCAC 46569577 Query 481 CCGGAGATGACCACGCCCCGGAACTGGAAGACGGAAGTG 519 || ||||||||||||||||| |||||||| ||||||||| Sbjct 46569576 CCTGAGATGACCACGCCCCGCAACTGGAAAACGGAAGTG 46569538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6492581866268