Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 1e-16 >seq8 Length=160039680 Score = 96.9 bits (106), Expect = 1e-16 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 2808 TGGGCGACAATAACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCG 2867 ||||| |||| ||||| | | ||||||||| |||||||| || |||||||||||| Sbjct 12018378 TGGGCAACAACAACCA-GACACTGATGGAGTGAGCAATGCCATGGATGATTGGCATTGCC 12018320 Query 2868 ATTCCACGTGGATGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCA 2927 |||||| ||| |||| ||| ||||| | ||| | || ||| |||||||| ||||||| Sbjct 12018319 ATTCCAAGTGTATGGTAGACTGAGTCATTACCTAATCTCCCCAGACCTGGGTCCTGCCCA 12018260 Query 2928 GCTACAAC 2935 || |||| Sbjct 12018259 ACTCCAAC 12018252 Score = 78.8 bits (86), Expect = 3e-11 Identities = 114/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 4221 AGTGGGAGCTCAAGAAGGAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACA 4280 ||||| |||| |||| ||| | |||||||||||| | || ||||||| ||| | | Sbjct 12017157 AGTGGAAGCTGCAGAAAGAAGGCAACAAGAGGTGGAATTCTGAAATCCAGTTCACCAGCC 12017098 Query 4281 ACTACAACGACCCCCAGTTTGTGGACTTTGCCCCGGACAGCACCGGGGAATACAGAACCA 4340 ||| ||| ||| || || |||||||||| || || | | | || |||||| ||| Sbjct 12017097 ACTCCAATGACATACAATTCATGGACTTTGCTCCTGATTCAAACAGAGAGTACAGAGCCA 12017038 Query 4341 CCAGACCTATCGGAACCCGATACCTTACCCGACCCCTTTAA 4381 |||| | || || ||| ||| ||||| | ||| || ||| Sbjct 12017037 TCAGAGCCATTGGCACCAGATGGCTTACTCAACCTCTGTAA 12016997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14742366622285