Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq6 80.6 8e-12 >seq6 Length=146485248 Score = 80.6 bits (88), Expect = 8e-12 Identities = 163/238 (68%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 3036 TTGGGGGTATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAA-- 3093 ||||||| | ||||||||| | || ||||||||||| | || || |||||| Sbjct 7866152 TTGGGGGAACTTTGACTTCTATCTCTTGCACTGCCACTTCTTGTTCCGAGATTGGCAAAG 7866093 Query 3094 AGACTCATCAACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAAGCTCTTTAAC 3153 ||||| ||| ||| | ||||| ||| | | ||| ||| | |||||||||| ||| Sbjct 7866092 AGACTTGCCAATAACCATTGGGGGTTCTGTCTCAAACATCTCCATGTCAAGCTCTTCAAC 7866033 Query 3154 ATTCAAGTCAAAGAGGTCACGCAGAAT-GACGGTACGACGACGATTG---CCAATAACCT 3209 | | ||| || ||||||| | ||| ||| || | || || | | |||||| | Sbjct 7866032 CTCCCAGTTTAAAAGGTCAC-AACAATAGACTCGACAATGATCATGGTCACTAATAACTT 7865974 Query 3210 TACCAGCACGGTTCAGGTGTTTACTGACTCGGAGTACCAGCTCCCGTACGTCCTCGGC 3267 ||||| || |||||||| ||||| || | ||||| || || || ||||| ||| Sbjct 7865973 TACCATCAGTGTTCAGGTCTTTACAGAGAATAATTACCAACTGCCATATGTCCTTGGC 7865916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860380484260