Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq21 125 2e-25 seq26 78.8 3e-11 >seq21 Length=68186955 Score = 125 bits (138), Expect = 2e-25 Identities = 69/69 (100%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 4945 TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTT 5004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45202850 TGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTT 45202791 Query 5005 TCTATGTGG 5013 ||||||||| Sbjct 45202790 TCTATGTGG 45202782 >seq26 Length=50160631 Score = 78.8 bits (86), Expect = 3e-11 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 4605 CGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATT 4650 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 47921513 CGATTATAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATT 47921558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17122716617415