Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 1e-15 >seq6 Length=146485248 Score = 93.3 bits (102), Expect = 1e-15 Identities = 163/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 3261 TGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCA--GA 3318 |||||| ||||||| ||| | | ||| ||||||||||||| |||| ||||| || Sbjct 7866151 TGGGGGAACTTTGACTTCTATCTCTTGCACTGCCACTTCTTGTTCCGAGATTGGCAAAGA 7866092 Query 3319 GACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATG 3378 ||||| ||| ||||||||||| || | | ||| ||| | ||||| ||||||| Sbjct 7866091 GACTTGCCAATAACCATTGGGGGTTCTGTCTCAAACATCTCCATGTCAAGCTCTTCAACC 7866032 Query 3379 TCCAAGTCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTG---CAAACAATCTCA 3435 ||| ||| || | |||||||| || ||||| || ||| | | || || | | Sbjct 7866031 TCCCAGTTTAAAAGGTCACAACAATAGACTCGACAATGATCATGGTCACTAATAACTTTA 7865972 Query 3436 CCTCAACAATTCAAGTCTTTACGGATGATGAGCATCAACTCCCGTATGTCCTGGGC 3491 || | |||| |||||||| || || | | ||||| || |||||||| ||| Sbjct 7865971 CCATCAGTGTTCAGGTCTTTACAGAGAATAATTACCAACTGCCATATGTCCTTGGC 7865916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226741911215