Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq6 125 2e-25 >seq6 Length=146485248 Score = 125 bits (138), Expect = 2e-25 Identities = 258/384 (67%), Gaps = 16/384 (4%) Strand=Plus/Minus Query 3985 CAGCGTGTGGATGGAGAGGGACGTGTACCTCCAAGGACCCATCTGGGCCAAGATCCCAGA 4044 ||| || ||||||| || | ||||||| ||||| ||||||||||||||| | || | Sbjct 7865342 CAGTGTCAGGATGGAAAGAAATGTGTACCAGCAAGGTCCCATCTGGGCCAAGGTGCCCAA 7865283 Query 4045 GACGGGGGCGCACTTTCACCCCTCTCCGGCCATGGGCGGATTCGGACTCAAACACCCACC 4104 || || || ||| |||| || || | |||||| |||| |||||||| | || | Sbjct 7865282 CACTGGAGCCTTCTTCCACCTATCCCCTGTAATGGGCAGATTTGGACTCAAGAATCCTCT 7865223 Query 4105 GCCCATGATGCTCATCAAGAACACGCCTGTGCCCGGAAATATCACCAGCTTCTCGGACGT 4164 ||||||||||| || || |||| |||||| | || | |||| ||| | Sbjct 7865222 GCCCATGATGCCTATAAATAACATGCCTGTTC-------TAGC-----CTTCAGTGACTT 7865175 Query 4165 GCCCGTCAGCAGCTTCATCACCCAGTACAGCACCGGGCAGGTCACCGTGGAGATGGAGTG 4224 | | || |||||| ||||| | || ||| ||||| | || |||| Sbjct 7865174 ----ATAGTAAAATTTATCACCTAGTACTTGATTGGACAGATCACCTTCTCCATCAAGTG 7865119 Query 4225 GGAGCTCAAGAAGGAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTACACAAACAACTA 4284 |||| | |||| ||| || |||||||||||| | || ||||||||||| | | |||| Sbjct 7865118 GGAGGTGCAGAAAGAAGACAACAAGAGGTGGAATACTGAAATCCAGTACACCAGCCACTA 7865059 Query 4285 CAACGACCCCCAGTTTGTGGACTTTGCCCCGGACAGCACCGGGGAATACAGAACCACCAG 4344 ||| ||| || || ||||||||| || | | | | | |||||||||| ||| Sbjct 7865058 CAATGACATACAATTCATGGACTTTGTTCCTCATTTAAACAGAAAGTACAGAACCATCAG 7864999 Query 4345 ACCTATCGGAACCCGATACCTTAC 4368 | | || || ||| ||| ||||| Sbjct 7864998 AGCCATTGGCACCAGATGGCTTAC 7864975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741983826655