Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 2e-12 >seq6 Length=146485248 Score = 82.4 bits (90), Expect = 2e-12 Identities = 205/310 (66%), Gaps = 25/310 (8%) Strand=Plus/Minus Query 3960 GTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACACGGACGGCAACTTCCACCCG 4019 ||||||| ||| |||||||||||||||||| | || |||| | | | |||||||| Sbjct 7865320 GTGTACCAGCAAGGTCCCATCTGGGCCAAGGTGCCCAACACTGGAGCCTTCTTCCACCTA 7865261 Query 4020 TCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCCTCAGATCCTGATCAAGAAC 4079 || || | |||||| | ||||| || || |||||| ||| ||| | || || ||| Sbjct 7865260 TCCCCTGTAATGGGCAGATTTGGACTCAAGAATCCTCTGCCCATGATGCCTATAAATAAC 7865201 Query 4080 ACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTCAAAGCTGAACTCTTTCATC 4139 | |||||| | | |||||| | | | || | || || ||| Sbjct 7865200 ATGCCTGTTCTAG---------------CCTTCAGTGACTTATAG-TAAA---ATTTATC 7865160 Query 4140 ACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATGGGAGCTGCAGAAGGAAAAC 4199 || | ||| | |||||| ||| | | || | |||||| ||||||| ||| || Sbjct 7865159 ACCTAGTACTTGATTGGACAGATCACCTTCTCCATCAAGTGGGAGGTGCAGAAAGAAGAC 7865100 Query 4200 AGCAAGCGCTGGAACCCCGAGATCCAGTACACCTCCAACTACTACAA--ATCTACAAGT- 4256 | |||| | ||||| | || |||||||||| ||| | ||||||| | ||||| | Sbjct 7865099 AACAAGAGGTGGAATACTGAAATCCAGTACA---CCAGCCACTACAATGACATACAATTC 7865043 Query 4257 GTGGACTTTG 4266 ||||||||| Sbjct 7865042 ATGGACTTTG 7865033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945206320070