Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq7 580 4e-162 >seq7 Length=104786220 Score = 580 bits (642), Expect = 4e-162 Identities = 909/1301 (70%), Gaps = 78/1301 (6%) Strand=Plus/Minus Query 1341 ACAAGAACCTGCAGAATTTTTGCTTTTCATGGCTGGAACTATGTTAAAGTTTGCCATGCT 1400 || ||||| |||| ||||||| || ||| ||||| || |||||||||||||||| Sbjct 92709715 ACCAGAACTTGCAAAATTTTTAGCTTGCATAATTGGAATTACATTAAAGTTTGCCATGCA 92709656 Query 1401 ATTTGCTGTGTTTTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCA 1460 ||| || || | ||||||||||| ||||||||||| || | | ||||| |||||| Sbjct 92709655 ATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCATACTGTTTCACGGACCA 92709596 Query 1461 GCCAGCACAGGCAAATCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGT 1520 || || || ||| ||||| |||||| ||||| | ||||| ||||| ||| Sbjct 92709595 GCTTCTACTGGAAAAAGCATTATAGCACAACATATAGCCAACTTGGTTGGAAATGTAGGT 92709536 Query 1521 TGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATT 1580 ||||| ||||| || ||||||||||||||||||||||||||||| ||||| || || ||| Sbjct 92709535 TGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTGTACTAACAAAAATTTAATT 92709476 Query 1581 TGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCT 1640 ||| | || |||||||| |||||| | | ||||||||||| || ||||||||| |||| Sbjct 92709475 TGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAAACCAATTCAAAGCCATTCGCTCG 92709416 Query 1641 GGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCA 1700 |||||||| || | ||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 92709415 GGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAAACAGATAGAACCAACTCCA 92709356 Query 1701 GTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCA 1760 || | |||||||||||||| |||||||| |||||||| || ||||| ||||||||| Sbjct 92709355 GTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAATTGGTTGCGAGGAAAGACCA 92709296 Query 1761 GAACACACTCAACCAATCAGAGACAGAATGCTTAACATTCATCTAAC-ACATACCTTGCC 1819 |||||||| |||||||| |||||||||||| ||||||| || |||| | | | ||| || Sbjct 92709295 GAACACACCCAACCAATTAGAGACAGAATGGTTAACATCAATTTAACTAGAAAACTTCCC 92709236 Query 1820 TGGTGACTTTGGTTTGGTTGACAAAAATGAATGGCCCATGATTTGTGCTTGGTTGGT-AA 1878 ||||||||||| | | || ||| |||||||| | ||||||||||||||||| || Sbjct 92709235 -GGTGACTTTGGACTTTTAGAAGAAACAGAATGGCCTTTAATTTGTGCTTGGTTGGTAAA 92709177 Query 1879 AGAATGGTTACCAATCTACCATGGCAAGCTACTGTGC-TAAATGGGGCAAAGTTCCTGAT 1937 | || || |||||| | || ||||| |||||| ||| | | ||||| || || || || Sbjct 92709176 AAAAGGGCTACCAAGCAACAATGGCCAGCTAC-ATGCATTACTGGGGAAATGTGCCCGAC 92709118 Query 1938 TGGTCAGAAAACTGGGCGGAGCCAAAGGTGCCAACTCCTATAAATTTAC---TAGGTTCG 1994 ||| | || || |||| ||| | || || ||||| |||||| || || || | Sbjct 92709117 TGGGCGGAGAAATGGGAGGAACTCAAAATGAGCACTCCCATAAATACACCAACAGCTTTG 92709058 Query 1995 GCACGCTCACCATTCACGACACCGAAAAGTACGCCTCTCAGCCAGAACTATGCACTAACT 2054 |||||| | | || ||| || || ||||||||||||||| | ||| Sbjct 92709057 CAGAGCTCAC------AGTCTTTGACAAGCACTCCAGCAAGCCAGAACTATGCATTGACT 92709004 Query 2055 CCACTTGCATCGGATCTCGAGGACCTGGCTTTAGAGCCTTGGAGCACACCAAATACTCCT 2114 ||| |||| || | ||| || ||| || ||||| |||||| |||| Sbjct 92709003 CCAAGTGCAATCGACTTGGAGAACTTGGTATTGGAGCCCTGGAGCGAACCA--------- 92708953 Query 2115 GTTGCGGGCACTGCAGAAACCCAGAACACTGGGGAAGCTGGTTCCAAAGCCTGCCAAGA- 2173 ||||| || || || ||||||||| || | | | ||||| Sbjct 92708952 ------GGCACACCAAAACAACACCCGACTGGGGAA-----TTACCCACTTCGTCAAGAC 92708904 Query 2174 -TGGTCAACTGAGCCCAACTTGGTCAGAGATCGAGGAGGATTTGAGAGCGTGCTTCGGTG 2232 ||||| || ||| || || ||||| |||| || ||| | |||| ||||| || | Sbjct 92708903 CTGGTCTACAGAGTCCGACCTGGTCGCAGATAGAACGGGACATTCGAGCTTGCTTTGGAG 92708844 Query 2233 CGGAACCGTTGAAGAAAGACTTCAGCGAGCCGCTGAACTTGGACTAAGGTACGATGGCGC 2292 ||| ||| || | || || | || |||||||||||||| | Sbjct 92708843 AGGA------------------CAGTGATCTGCCAGACCTTGAATAAGGTACGATGGCAC 92708802 Query 2293 CTCCAGCTAAAAGNNNNNNNNNNNNNNNGGGTTTAAGGGATGGTTGGTTGGTGGGGTATT 2352 |||| || || || || |||||| |||||||| | | || Sbjct 92708801 CTCCTGCAAAGAG--------AGCAAGAGG---TAAGGGTTGGTTGGTATGGGAGGAGGG 92708753 Query 2353 AATGTTTAATTACCTGTTTTACAGGCCTGAAATCACTTGGTTTTAGGTTGGGT-----GC 2407 | | || | | || |||| ||| |||| ||||| | ||| | Sbjct 92708752 CAGGCTTCAAAAACT-AACTACA-----CAAA--ACTTTTTTTTATTCTAGGTCTAACAC 92708701 Query 2408 CTCCTGGCTACAAGTACCTGGGACCAGGGAACAGCCTTGACCAAGGAGAACCAACCAATC 2467 |||||| || || ||||| || || || || ||||||||||| |||||||| |||| Sbjct 92708700 TTCCTGGATATAAATACCTTGGTCCGGGAAATTCACTTGACCAAGGTGAACCAACTAATC 92708641 Query 2468 CATCTGACGCCGCTGCCAAAGAGCACGACGAGGCCTATGATCAATACATCAAATCTGGAA 2527 | || ||||| || || ||||| ||||| || || ||||| ||||||||||||||||||| Sbjct 92708640 CTTCAGACGCTGCAGCTAAAGAACACGATGAAGCTTATGACCAATACATCAAATCTGGAA 92708581 Query 2528 AAAATCCTTACCTGTACTTCTCTGCTGCTGATCAACGCTTTATTGACCAAACCAAGGACG 2587 ||||||||||||| ||||| || ||||| || || || || | |||| | | | Sbjct 92708580 AAAATCCTTACCTATACTTTTCAGCTGCAGACGAAAAATTCATCAAAGAAACAGAAAAAG 92708521 Query 2588 CCAAAGACTGGGGAGGCAAGGTTGGTCACTACTTTTTTAGA 2628 | ||||||| || || ||||||| |||||||||||| Sbjct 92708520 CAAAAGACTACGGCGGACGAATTGGTCATTACTTTTTTAGA 92708480 Score = 203 bits (224), Expect = 1e-48 Identities = 414/599 (69%), Gaps = 31/599 (5%) Strand=Plus/Minus Query 3078 AGGCAACATGGCAAAAGATGATGCTCATGAGCAAATTTGGACACCATGGAGCTTGGTGGA 3137 |||| | |||| | |||||||||||| ||||| ||| ||||||||| |||| || Sbjct 92707999 AGGCCAAATGGTGCAGGATGATGCTCATAGCCAAATGGTGACTCCATGGAGCCTGGTAGA 92707940 Query 3138 TGCTAATGCTTGGGGAGTTTGGCTCCAGCCAAGTGACTGGCAATACATTTGCAACACCAT 3197 ||| ||||||||||| || ||| | | || |||| ||||| ||| ||||| ||| Sbjct 92707939 TGCAAATGCTTGGGGTGTATGGTTTAATCCTGGTGATTGGCAGCTAATTACCAACAACAT 92707880 Query 3198 GAGCCAGCTTAACTTGGTATCACTTGATCAAGAAATATTCAATGTAGTGCTGAAAACTGT 3257 || | | |||||||| |||| ||||||||||| ||||| ||||| ||||| | Sbjct 92707879 GACAGAATTCAACTTGGTTAGTTTTGAGCAAGAAATATTTAATGTTGTGCTCAAAACAAT 92707820 Query 3258 TACAG----AGCAAGACTTAGGAGGTCAAGCTATAAAAATATACAACAATGACCTTACAG 3313 ||| | ||||| | | | | | | |||||| ||||||||||| | || | Sbjct 92707819 TACTGAATCAGCAA-CCACA------CCACCAACAAAAATCTACAACAATGATTTAACTG 92707767 Query 3314 CTTGCATGATGGTTGCAGTAGACTCAAACAACATTTTGCCATACACACCTGCAGCAAACT 3373 || || | ||||| ||| ||||| ||||||||| ||||||||||| ||||| || | | Sbjct 92707766 CTAGCCTAATGGTAGCACTAGACACAAACAACACATTGCCATACACTCCTGCTGC-ACCA 92707708 Query 3374 CAATG-GAAACACTTGGTTTCTACCCCTGGAAACCAACCATAGCATCACCATACAGGTAC 3432 ||| |||||||||||||| || || ||| |||||| | | || | | || || ||| Sbjct 92707707 AGATGTGAAACACTTGGTTTTTATCCATGGCTACCAACAAAACCAACTCACTATAGATAC 92707648 Query 3433 TATTTTTGCGTTGAC-AGAGATCTTTCAGT-GACCTACGAAAA----TCAAGAAGGCACA 3486 || | | | || ||| | | ||| | ||| || | | |||| || || Sbjct 92707647 TA-CATGACATGCACTAGAAACC--TCACTCCACCAACACATACAGGACAAGCGGGAACC 92707591 Query 3487 GTTGAACATAATGTGATGGGAACACCAAAAGGAATGAATTCTCAATTTTTT--ACCATTG 3544 | |||| ||| || | |||||| | || | | || |||| || |||| Sbjct 92707590 AT--AACA-AATACTATTAGTGCACCAACA--CATTCAGACGTTATGTTTTACACAATTG 92707536 Query 3545 AGAACACA-CAACAAATCACATTGCTCAGAACAGGGGACGAATTTGCCACAGGTACTTAC 3603 | || || | | | |||| || || |||||||| ||||||||| ||||||| || ||| Sbjct 92707535 AAAATGCAGTACCTATTCACCTT-CTTAGAACAGGAGACGAATTTTCCACAGGCACCTAC 92707477 Query 3604 TACTTTGACACAAATTCAGTTAAACTCACACACACGTGGCAAACCAACCGTCAACTTGG 3662 |||||||||||||| || ||||| | || ||| | |||||||||||| | |||||| Sbjct 92707476 TACTTTGACACAAAGCCACTTAAAATGACGCACTCATGGCAAACCAACAGATCACTTGG 92707418 Score = 100 bits (110), Expect = 9e-18 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 4064 CACTAAATGGCA--TTCTTACAAATGCAAACCCTATTGGGACTAAAAATGACATTCATTT 4121 || ||||||||| || |||| || | | || ||||| |||| ||||| || || Sbjct 92707019 CATTAAATGGCACATTATTACCAACGGAT--CCAATTGGTGGAAAAACAGACATACACTT 92706962 Query 4122 TTCAAATGTTTTTAACAGCTATGGTCCACTAACTGCATTTTC--ACACCCAAGTCCTGTA 4179 | |||| | |||| |||||| ||||| |||||| | |||| | | || | Sbjct 92706961 TACAAACACACTGAACACCTATGGACCACTTACTGCACTAAACAACACTCCA--CCAATT 92706904 Query 4180 TACCCTCAAGGACAAATATGGGACAAAGAACTAGATCTTGAACACAAACCTAGACTTCAC 4239 || ||| | || ||||| |||||||||||||| || || | ||||| ||||| || Sbjct 92706903 TATCCTAATGGGCAAATTTGGGACAAAGAACTTGACGCAGATCTTAAACCAAGACTACAT 92706844 Query 4240 ATAACTGCTCCATTTGTTTGTAAAAACAATGCACCTGGACA 4280 |||||||||| ||||||||||| |||||| |||| || || Sbjct 92706843 GTAACTGCTCCTTTTGTTTGTAAGAACAATCCACCAGGGCA 92706803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16363832738040