Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq7 455 1e-124 >seq7 Length=104786220 Score = 455 bits (504), Expect = 1e-124 Identities = 485/634 (76%), Gaps = 7/634 (1%) Strand=Plus/Minus Query 1351 AAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTTTGTCA 1410 |||| | ||||| || |||||||||| |||| ||||||| ||||||||||| || Sbjct 92709719 AAATACCAGAACTTGCAAAATTTTTAGCTTGCATAATTGGAATTACATTAAAGTTTGCCA 92709660 Query 1411 CGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGG 1470 || || | || || | || ||||||||||| |||||||| || | || ||||| || Sbjct 92709659 TGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCATACTGTTTCACGG 92709600 Query 1471 ACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTG-TGGGTAATG 1529 |||||| ||| |||||| || || || ||| ||||| ||| || | || |||| Sbjct 92709599 ACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATAGC-CAACTTGGTTGGAAATG 92709541 Query 1530 TTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATT 1589 | ||||| || ||||| ||||||||||| |||||||||||||||||||| || ||||||| Sbjct 92709540 TAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTGTACTAACAAAAATT 92709481 Query 1590 TAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAA--CAAGTTAATCAATTTAAAGCAAT 1647 ||||||||||||| |||||||| |||||| |||| ||||| || ||||| ||||| || Sbjct 92709480 TAATTTGGATTGAGGAAGCTGGCAACTTT--TCAAATCAAGTAAACCAATTCAAAGCCAT 92709423 Query 1648 TTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACC 1707 | | || || ||||| || |||||||| |||||||| ||||| || || || || ||||| Sbjct 92709422 TCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAAACAGATAGAACC 92709363 Query 1708 AACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGA 1767 |||||||||| | ||||| || |||||| | || |||| || |||||||| || || || Sbjct 92709362 AACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAATTGGTTGCGAGGA 92709303 Query 1768 AAGACCTGAACATACACAACCAATAAGAGACAGAATGTTGAACATTAAGTTAGTATGTAA 1827 |||||| ||||| || |||||||| |||||||||||| | ||||| || ||| | || Sbjct 92709302 AAGACCAGAACACACCCAACCAATTAGAGACAGAATGGTTAACATCAATTTAACTAGAAA 92709243 Query 1828 GCTTCCAGGAGACTTTGGTTTGGTTGATAAAGAAGAATGGCCTTTAATATGTGCATGGTT 1887 ||||| || |||||||| | | || || ||||||||||||||| ||||| ||||| Sbjct 92709242 ACTTCCCGGTGACTTTGGACTTTTAGAAGAAACAGAATGGCCTTTAATTTGTGCTTGGTT 92709183 Query 1888 AGT-TAAACATGGTTATGAATCAACCATGGCTAACTATACACATCATTGGGGAAAAGTAC 1946 || ||| | || || || |||| ||||| | ||| | ||| | |||||||| || | Sbjct 92709182 GGTAAAAAAAGGGCTACCAAGCAACAATGGCCAGCTACATGCATTACTGGGGAAATGTGC 92709123 Query 1947 CAGAATGGGATGAAAACTGGGCGGAGCCTAAAAT 1980 | || |||| || || |||| ||| | ||||| Sbjct 92709122 CCGACTGGGCGGAGAAATGGGAGGAACTCAAAAT 92709089 Score = 307 bits (340), Expect = 4e-80 Identities = 539/776 (69%), Gaps = 24/776 (3%) Strand=Plus/Minus Query 2889 CTGGGGGTGTGGGGATTTCTACGGGTACTTTCAATAATCAGACGGAATTTAAATTTTTGG 2948 ||||||| ||||| | ||||| || | ||||||||||||||||||||| | | | | | Sbjct 92708171 CTGGGGGGGTGGGTGTGTCTACAGGCAGTTTCAATAATCAGACGGAATTCCACTATCTTG 92708112 Query 2949 AAAACGGATGGGTGGAAATCACAGCAAACTCAAGCAGACTTGTACATTTAAATATGCCAG 3008 | |||| | ||| ||||||| || | | ||| ||||| |||||||| ||||||| Sbjct 92708111 GAGACGGTTTGGTTCAAATCACCGCGCATGCGTCCAGGCTTGTCCATTTAAACATGCCAG 92708052 Query 3009 AAAGTGAAAATTATAGAAGAGTGGTTGTAAATAATATGGATAAAACTGCAGTTAACGGAA 3068 || ||| || ||||| | |||| |||| || | ||| || || Sbjct 92708051 AACATGAGTCCTACAGAAGGATAAATGTACTTAATTCAGA---AGCTGGTGTGGCAGGCC 92707995 Query 3069 ACATGGCTTTAGATGATATTCATGCACAAATTGTAACACCTTGGTCATTGGTTGATGCAA 3128 | |||| |||||| |||| ||||| || || || ||| |||| ||||||| Sbjct 92707994 AAATGGTGCAGGATGATGCTCATAGCCAAATGGTGACTCCATGGAGCCTGGTAGATGCAA 92707935 Query 3129 ATGCTTGGGGAGTTTGGTTTAATCCAGGAGATTGGCAACTAATTGTTAATACTATGAGTG 3188 |||||||||| || ||||||||||| || |||||||| |||||| || | |||| | Sbjct 92707934 ATGCTTGGGGTGTATGGTTTAATCCTGGTGATTGGCAGCTAATTACCAACAACATGACAG 92707875 Query 3189 AGTTGCATTTAGTTAGTTTTGAACAAGAAATTTTTAATGTTGTTTTAAAGACTGTTTCAG 3248 | || | || ||||||||||| |||||||| ||||||||||| | || || || | | Sbjct 92707874 AATTCAACTTGGTTAGTTTTGAGCAAGAAATATTTAATGTTGTGCTCAAAACAATTACTG 92707815 Query 3249 AATCTGCTACTCAGCCACCAACTAAAGTTTATAATAATGATTTAACTGCATCATTGATGG 3308 |||| || || |||||||| ||| | || || |||||||||||||| | |||| Sbjct 92707814 AATCAGCAACCACACCACCAACAAAAATCTACAACAATGATTTAACTGCTAGCCTAATGG 92707755 Query 3309 TTGCATTAGATAGTAATAATACTATGCCATTTACTCCAGCAGCTATGAGATCTGAGACAT 3368 | ||| |||| | || || || |||||| ||||| || || |||| ||| ||| Sbjct 92707754 TAGCACTAGACACAAACAACACATTGCCATACACTCCTGCTGCACCAAGATGTGAAACAC 92707695 Query 3369 TGGGTTTTTATCCATGGAAACCAACCATACCAACTCCATGGAGATATTATTTTCAATGGG 3428 | ||||||||||||||| |||||| | |||||||| | ||||| || | ||| Sbjct 92707694 TTGGTTTTTATCCATGGCTACCAACAAAACCAACTCACTATAGATACTACATGACATGCA 92707635 Query 3429 ATAG-AACATTAAT--ACCATCTCATACTGGAACTAGTGGCACACC--AACAAATA-TAT 3482 ||| ||| | | | |||| | ||||| || || || || | ||| |||||||| ||| Sbjct 92707634 CTAGAAACCTCACTCCACCAACACATACAGG-ACAAGCGGGA-ACCATAACAAATACTAT 92707577 Query 3483 ------ACCATGGTACAGATCCAGATGATGTTCAATTTTATACTATTGAAAATTCTGTGC 3536 |||| ||| || || || ||| ||||| || ||||||||| | || | Sbjct 92707576 TAGTGCACCA----ACACATTCA---GACGTTATGTTTTACACAATTGAAAATGCAGTAC 92707524 Query 3537 CAGTACACTTACTAAGAACAGGTGATGAATTTGCTACAGGAACAtttttttttGATTGTA 3596 | | ||| | || |||||||| || |||||| | ||||| || | | ||||| | Sbjct 92707523 CTATTCACCTTCTTAGAACAGGAGACGAATTTTCCACAGGCACCTACTACTTTGACACAA 92707464 Query 3597 AACCATGTAGACTAACACATACATGGCAAACAAATAGAGCATTGGGCTTACCACCA 3652 | ||| || | | || || |||||||||| || ||| || | |||||||||||| Sbjct 92707463 AGCCACTTAAAATGACGCACTCATGGCAAACCAACAGATCACTTGGCTTACCACCA 92707408 Score = 192 bits (212), Expect = 2e-45 Identities = 258/358 (72%), Gaps = 7/358 (2%) Strand=Plus/Minus Query 4077 TACCAACAGATCCAATTGGAGGTAAAACAGGAATTAACTATACTAATATATTTAATACTT 4136 ||||||| ||||||||||| || ||||||| || ||| ||| || | | | || || | Sbjct 92707001 TACCAACGGATCCAATTGGTGGAAAAACAGACATACACTTTACAAACACACTGAACACCT 92706942 Query 4137 ATGGTCCTTTAACTGCATTAAATAATGTACCACCAGTTTATCCAAATGGTCAAATTTGGG 4196 |||| || | |||||| |||| || |||||| ||||||| ||||| |||||||||| Sbjct 92706941 ATGGACCACTTACTGCACTAAACAACACTCCACCAATTTATCCTAATGGGCAAATTTGGG 92706882 Query 4197 ATAAAGAATTTGATACTGACTTAAAACCAAGACTTCATGTAAATGCACCATTTGTTTGTC 4256 | |||||| |||| | || | ||||||||||| ||||||| ||| || ||||||||| Sbjct 92706881 ACAAAGAACTTGACGCAGATCTTAAACCAAGACTACATGTAACTGCTCCTTTTGTTTGTA 92706822 Query 4257 AAAATAATTGTCCTGGTCAATTATTTGTAAAAGTTGCGCCTAATTTAACAAATGAATATG 4316 | || ||| || || || | ||||||||| |||| |||||| | |||| | | Sbjct 92706821 AGAACAATCCACCAGGGCAGCTTTTTGTAAAAATTGCACCTAAT----CTGATGATTTTA 92706766 Query 4317 ATCCTGATGCATCTGCTAATATGTCAAGAATTGTAACTTACTCAGATTTTTGGTGGAAAG 4376 || | || ||| | | | ||||||| |||| ||||| ||||||||||||||| Sbjct 92706765 ATGCAGA---CTCTCCACAGCAGCCAAGAATAATAACCTACTCTAATTTTTGGTGGAAAG 92706709 Query 4377 GTAAATTAGTATTTAAAGCTAAACTAAGAGCCTCTCATACTTGGAATCCAATTCAACA 4434 | | | | ||||| ||| | | | ||| | | ||| ||||||||||| || || Sbjct 92706708 GCACACTGACATTTACAGCAAGAATGAGATCTTGCAATATGTGGAATCCAATACATCA 92706651 Score = 178 bits (196), Expect = 4e-41 Identities = 270/380 (71%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 2267 GACTTGGATTAAGGTACGATGGCACCTCCGGCAAAGAGAGCCAGGAGAGGTAAGGGTGTG 2326 ||| | || |||||||||||||||||||| ||||||||||| || |||||||||| | Sbjct 92708826 GACCTTGAATAAGGTACGATGGCACCTCCTGCAAAGAGAGCAAG---AGGTAAGGGTTGG 92708770 Query 2327 TTAGTAAAGTGGGGGGAGGGGAAAGATTTAATAACTTAACTAAGTA----TGTGtttttt 2382 || ||| |||| |||||| | | || || |||| ||||| | | | |||| | Sbjct 92708769 TTGGTA---TGGGAGGAGGGCAG-GCTTCAAAAACT-AACTACACAAAACTTTTTTTTAT 92708715 Query 2383 tATAGGACTTGTGCCTCCAGGTTATAAATATCTTGGGCCTGGGAACAGTCTTGACCAAGG 2442 | |||| || | ||| || |||||||| ||||| || || || ||||||||||| Sbjct 92708714 TCTAGGTCTAACACTTCCTGGATATAAATACCTTGGTCCGGGAAATTCACTTGACCAAGG 92708655 Query 2443 AGAACCAACTAACCCTTCTGACGCCGCTGCAAAAGAACACGACGAAGCTTACGCTGCTTA 2502 ||||||||||| ||||| ||||| || || ||||||||||| |||||||| | || Sbjct 92708654 TGAACCAACTAATCCTTCAGACGCTGCAGCTAAAGAACACGATGAAGCTTATGACCAATA 92708595 Query 2503 TCTTCGCTCTGGTAAAAACCCATACTTATATTTCTCGCCAGCAGATCAACGCTTTATAGA 2562 | ||||| ||||| || ||| |||| || || | ||||| || || || | Sbjct 92708594 CATCAAATCTGGAAAAAATCCTTACCTATACTTTTCAGCTGCAGACGAAAAATTCATCAA 92708535 Query 2563 TCAAACTAAGGACGCTAAAGATTggggggggAAAATAGGACATTAtttttttAGAGC--- 2619 |||| | | || ||||| | || || ||| || ||||| ||||||||||| Sbjct 92708534 AGAAACAGAAAAAGCAAAAGACTACGGCGGACGAATTGGTCATTACTTTTTTAGAGCAAA 92708475 Query 2620 -TAAAAAGGCAATTGCTCCA 2638 ||||| ||| |||||||| Sbjct 92708474 AAAAAAAAGCATTTGCTCCA 92708455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16920599827680