Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001662.1 Length=4801 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 4e-16 >seq7 Length=104786220 Score = 95.1 bits (104), Expect = 4e-16 Identities = 207/305 (68%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 2754 GTAGATAGCAACGCTTGGGGTGTATGGATGAGTCCTAAAGACTTTCAACAAATGA-AAAC 2812 |||||| || ||||||||||||||| | | |||| || | || | ||| | ||| Sbjct 92707944 GTAGATGCAAATGCTTGGGGTGTATGGTTTAATCCTGGTGATTGGCAGCTAATTACCAAC 92707885 Query 2813 ACTGTGTAGTGAAATTAGTTTGGTTACTTTGGAACAAGAAATAGACAATGTAACCATAAA 2872 | || | ||| | | ||||||| ||| || ||||||||| ||||| | || Sbjct 92707884 AACATG-ACAGAATTCAACTTGGTTAGTTTTGAGCAAGAAATATTTAATGTTGTGCTCAA 92707826 Query 2873 AACTGTAACAGAA--ACCAACCAAGGTAACGCATCTACCAAGCAATTCAACAATGACTTA 2930 ||| | || ||| | |||||| || || | || || | ||||||||| ||| Sbjct 92707825 AACAATTACTGAATCAGCAACCA----CAC-CACCAACAAAAATCTACAACAATGATTTA 92707771 Query 2931 ACTGCGTCGTTACAGGTTGCTTTAGATACTAACAACATACTGCCATATACTCCAGCTGCG 2990 ||||| || ||| || |||| || ||||||| | ||||||| ||||| ||||| Sbjct 92707770 ACTGCTAGCCTAATGGTAGCACTAGACACAAACAACACATTGCCATACACTCCTGCTGCA 92707711 Query 2991 CCGTTGGGGGAAACACTGGGCTTTGTTCCTTGGAGAGCAACCAAACCAACCCAATATAGG 3050 || | |||||||| || ||| ||| ||| | |||| |||||||| || ||||| Sbjct 92707710 CCAAGATGTGAAACACTTGGTTTTTATCCATGGCTACCAACAAAACCAACTCACTATAGA 92707651 Query 3051 TATTA 3055 || || Sbjct 92707650 TACTA 92707646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15250298558760