Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq7 2354 0.0 >seq7 Length=104786220 Score = 2354 bits (2610), Expect = 0.0 Identities = 2471/3233 (76%), Gaps = 71/3233 (2%) Strand=Plus/Minus Query 1346 TACCAACATTTAATATTAGCAATACAAGAACATGTAAAATATTCAGCATGCACAATTGGA 1405 ||| ||| |||| | | | ||||| ||||| || ||||| || ||| |||| ||||||| Sbjct 92709737 TACAAAC-TTTACTTTAAAAAATACCAGAACTTGCAAAATTTTTAGCTTGCATAATTGGA 92709679 Query 1406 ACTACATTAAAGTCTGCCATGCTATAACTTGTGTACTAAACAGACAAGGAGGAAAAAGAA 1465 | ||||||||||| |||||||| || || || || | ||||||||||| || ||||||| Sbjct 92709678 ATTACATTAAAGTTTGCCATGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAA 92709619 Query 1466 ATACAATTCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTCAACACATTG 1525 | || || || ||||| || ||||| || || |||||||| || || || ||||| || | Sbjct 92709618 ACACCATACTGTTTCACGGACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATAG 92709559 Query 1526 CAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATG 1585 | ||||| ||||| ||||| |||||||||||||| || ||||| |||||||||||||||| Sbjct 92709558 CCAACTTGGTTGGAAATGTAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATG 92709499 Query 1586 ACTGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAA 1645 ||||||| || ||||| ||||| |||||||| ||||| || ||||| || || ||||||| Sbjct 92709498 ACTGTACTAACAAAAATTTAATTTGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAA 92709439 Query 1646 ACCAATTCAAAGCCATATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAA 1705 |||||||||||||||| | || |||||||| || ||||||||||||||||| ||||| | Sbjct 92709438 ACCAATTCAAAGCCATTCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCA 92709379 Query 1706 GCAAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTA 1765 ||||||| || ||||||||||| ||| ||||||| |||||||||||||| || ||||| | Sbjct 92709378 GCAAACAGATAGAACCAACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCA 92709319 Query 1766 GAATAGGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGAATGTTAAACA 1825 |||| || |||||||||||||||||||| || |||||||| |||||||||||| | |||| Sbjct 92709318 GAATTGGTTGCGAGGAAAGACCAGAACACACCCAACCAATTAGAGACAGAATGGTTAACA 92709259 Query 1826 TAAACCTAACCAGAAAACTGCCAGGTGATTTTGGACTTTTAGAAGAAACTGAATGGCCAC 1885 | || |||| |||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 92709258 TCAATTTAACTAGAAAACTTCCCGGTGACTTTGGACTTTTAGAAGAAACAGAATGGCCTT 92709199 Query 1886 TAATATGTGCTTGGTTGGTAAAGAAAGGT-TACCAAGCAACAATGGCTAGCTATATGCAT 1944 |||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||| Sbjct 92709198 TAATTTGTGCTTGGTTGGTAAAAAAAGGGCTACCAAGCAACAATGGCCAGCTACATGCAT 92709139 Query 1945 CATTGGGGAAATGTACCTGATTGGTCAGAAAAATGGGAGGAGCCAAAAATGCAAACCCCA 2004 | ||||||||||| || || ||| | || ||||||||||| | |||||| || || Sbjct 92709138 TACTGGGGAAATGTGCCCGACTGGGCGGAGAAATGGGAGGAACTCAAAATGAGCACTCCC 92709079 Query 2005 ATAAATACACCAACAGACTCTCAGATTTCCACA-TCAGTGAAAACTTCGCCAGCGGACAA 2063 |||||||||||||||| | |||| || ||| || ||| || | ||||| | | Sbjct 92709078 ATAAATACACCAACAGCTTTGCAGAGCTC-ACAGTCTTTGACAAGCACTCCAGCAAGCCA 92709020 Query 2064 CAACTACGCAGCAACTCCAA-TACAGGAGGACCTGGATTTAGCTTTAGCCTTGGAGCCGT 2122 ||||| ||| ||||||| | || | || |||| | ||| | |||||||| | Sbjct 92709019 GAACTATGCATTGACTCCAAGTGCAATCG-ACTTGGAG--AACTTG-GTATTGGAGCCCT 92708964 Query 2123 GGAGCGAGCCAACAACACCAACTTTCACCAACCTGCACTTAACTCCAACACCGCCAGATT 2182 ||||||| ||| ||||||| | |||| || ||| | || || Sbjct 92708963 GGAGCGAACCAGGCACACCAA-----AACAAC----ACCCGACTGGGGAATTACCCACTT 92708913 Query 2183 CAGCAATAC--GGACACCA-AGTCCAACTTGGTCGGAAATAGAAACCGACATAAGAGCCT 2239 | ||| || || | || ||||| || |||||| | |||||| ||||| |||| | Sbjct 92708912 CGTCAAGACCTGGTCTACAGAGTCCGACCTGGTCGCAGATAGAACGGGACATTCGAGCTT 92708853 Query 2240 GCTTTGGTGAAAACTGTGCACCCACAACAAACCTTGAATAAGGTAGGATGGCGCCTCCTG 2299 ||||||| || || ||| | | | || ||||||||||||||| |||||| ||||||| Sbjct 92708852 GCTTTGGAGAGGACAGTG-ATCTGC--CAGACCTTGAATAAGGTACGATGGCACCTCCTG 92708796 Query 2300 CAAAAAGAGCAAGAGGTAAGGGTAGTTTTAAGGGGGTGGTGGGCATACATATAAAACTAA 2359 |||| |||||||||||||||||| | || ||| || ||||| | | |||||||| Sbjct 92708795 CAAAGAGAGCAAGAGGTAAGGGTTGGTTGGTATGGGAGGAGGGCAGGCTTCAAAAACTAA 92708736 Query 2360 CTGCAAATAAtttttttATATATTACAGGACTAACTCTACCAGGATACAAATACCTTGGT 2419 || || | || |||||| ||| || || ||||| || || ||||| |||||||||||| Sbjct 92708735 CTACACAAAACTTTTTTTTATTCTA--GGTCTAACACTTCCTGGATATAAATACCTTGGT 92708678 Query 2420 CCAGGAAACTCACTAGACCAAGGAGAACCAACTAATCCATCAGACGCCGCAGCAAAAGAA 2479 || ||||| ||||| |||||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 92708677 CCGGGAAATTCACTTGACCAAGGTGAACCAACTAATCCTTCAGACGCTGCAGCTAAAGAA 92708618 Query 2480 CACGACGAAGCCTACGACAAATACATAAAATCTGGAAAAAATCCATACTTCTACTTCTCA 2539 ||||| ||||| || ||| ||||||| ||||||||||||||||| ||| | ||||| ||| Sbjct 92708617 CACGATGAAGCTTATGACCAATACATCAAATCTGGAAAAAATCCTTACCTATACTTTTCA 92708558 Query 2540 GCAGCTGATGAAAAATTCATAAAAGAAACTGAACACGCAAAAGACTACGGAGGTAAAATT 2599 || || || ||||||||||| |||||||| ||| | |||||||||||||| || |||| Sbjct 92708557 GCTGCAGACGAAAAATTCATCAAAGAAACAGAAAAAGCAAAAGACTACGGCGGACGAATT 92708498 Query 2600 GGACATTACTTCTTCAGAGCAAAGCGT----GCCTTTGCTCCAAAACTCTCAGAAACAGA 2655 || |||||||| || |||||||| || |||||||||||||| ||||||| | Sbjct 92708497 GGTCATTACTTTTTTAGAGCAAAAAAAAAAAGCATTTGCTCCAAAACTTTCAGAAAACAA 92708438 Query 2656 CTCACCAACTACATCTCAA----CA--ACCAGAGGTAAGAAGATCGCCGAGAAAACACCC 2709 | |||| ||| || || || ||| || | |||||||| || |||||||| || Sbjct 92708437 CAAACCAGATACTTCAAAAGCTTCAGCACCTGATTTCAGAAGATCACCAAGAAAACATCC 92708378 Query 2710 AGGGTCTAAACCACCAGGAAAAAGACCTGCTCCAAGACATATTTTTATAAACTTAGCTaa 2769 ||| ||| | |||| |||||| |||| |||| ||| |||| ||| || |||||||| Sbjct 92708377 AGGATCTCAGGTACCAACCAAAAGAACTGCACCAAAACACATTTCTATTAATTTAGCTAA 92708318 Query 2770 aaaaaaa-------GCTAAAGGGACATCTAATACAAACTCTAACTCAATGAGTGAAAATG 2822 |||||| ||| ||| |||| |||||| | ||||||||| | ||| Sbjct 92708317 AAAAAAGAGCCCGTGCTGCCGGGGGTTCTAG---AAACTCAGAATCAATGAGTCATGATG 92708261 Query 2823 TGGAACAACACAACCCTATTAATGCAGGCACTGAATTGTCTGCAACAGGAAATGAATCTG 2882 ||| | || | | |||| |||||| |||| | || | |||||| | ||||| Sbjct 92708260 CTCAACCAAACGAGCAGCCTAATACAGGCATTGAACTTGCTACGGGAGGAAACGGATCTG 92708201 Query 2883 GGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTGTCTACAGGTA 2942 || | | |||||||||||||| | Sbjct 92708200 GGAG----CGCAGCGGTGGCGGCGGTAGGGGTGCTGGGGGGGTGGGTGTGTCTACAGGCA 92708145 Query 2943 CTTTCAATAATCAAACAGAATTTCAATACTTGGGGGAGGGCTTGGTTAGAATCACTGCAC 3002 |||||||||||| || ||||| || || | || || || |||||| |||||| || | Sbjct 92708144 GTTTCAATAATCAGACGGAATTCCACTATCTTGGAGACGGTTTGGTTCAAATCACCGCGC 92708085 Query 3003 ACGCATCAAGACTCATACATCTAAATATGCCAGAACACGAAACATACAAAAGAATACATG 3062 | || || || || | ||| |||| ||||||||||| || | |||| ||| ||| ||| Sbjct 92708084 ATGCGTCCAGGCTTGTCCATTTAAACATGCCAGAACATGAGTCCTACAGAAGGATAAATG 92708025 Query 3063 TACTAAATTCAGAATCAGGGGTGGCGGGACAAATGGTACAAGACGATGCACACACACAAA 3122 |||| ||||||||| | || ||||| || |||||||| || || ||||| || | |||| Sbjct 92708024 TACTTAATTCAGAAGCTGGTGTGGCAGGCCAAATGGTGCAGGATGATGCTCATAGCCAAA 92707965 Query 3123 TGGTAACACCTTGGTCACTAATAGATGCTAACGCATGGGGAGTGTGGTTCAATCCAGCGG 3182 |||| || || ||| || ||||||| || || ||||| || ||||| ||||| | | Sbjct 92707964 TGGTGACTCCATGGAGCCTGGTAGATGCAAATGCTTGGGGTGTATGGTTTAATCCTGGTG 92707905 Query 3183 ACTGGCAGTTAATATCCAACAACATGACAGAAATAAACTTAGTTAGTTTTGAACAAGAAA 3242 | |||||| |||| ||||||||||||||||| | ||||| ||||||||||| ||||||| Sbjct 92707904 ATTGGCAGCTAATTACCAACAACATGACAGAATTCAACTTGGTTAGTTTTGAGCAAGAAA 92707845 Query 3243 TATTCAATGTAGTACTTAAAACAATTACAGAATCAGCAACCTCACCACCAACCAAAATAT 3302 |||| ||||| || || ||||||||||| |||||||||||| |||||||||| ||||| | Sbjct 92707844 TATTTAATGTTGTGCTCAAAACAATTACTGAATCAGCAACCACACCACCAACAAAAATCT 92707785 Query 3303 ATAATAATGATCTAACTGCAAGCTTAATGGTCGCACTAGACACCAATAACACACTTCCAT 3362 | || |||||| ||||||| ||| ||||||| ||||||||||| || |||||| | |||| Sbjct 92707784 ACAACAATGATTTAACTGCTAGCCTAATGGTAGCACTAGACACAAACAACACATTGCCAT 92707725 Query 3363 ACACACCAGCAGCACCTAGAAGTGAAACACTTGGTTTTTATCCATGGTTACCTACAAAAC 3422 |||| || || ||||| ||| |||||||||||||||||||||||||| |||| ||||||| Sbjct 92707724 ACACTCCTGCTGCACCAAGATGTGAAACACTTGGTTTTTATCCATGGCTACCAACAAAAC 92707665 Query 3423 CAACTCAATACAGATATTACCTATCATGCATCAGAAACCTAAATCCACCAACATACACTG 3482 ||||||| || ||||| ||| | |||||| |||||||| | |||||||||| | || | Sbjct 92707664 CAACTCACTATAGATACTACATGACATGCACTAGAAACCTCACTCCACCAACACATACAG 92707605 Query 3483 GACAATCACAACAAATAACAGACTCAATACAAACAG---GACTACACAGT--GACATTAT 3537 ||||| | | |||||| ||||| | || | ||||| | ||| |||| Sbjct 92707604 GACAAGCGGGAACCATAACA-----AATACTATTAGTGCACCAACACATTCAGACGTTAT 92707550 Query 3538 GTTCTACACAATAGAAAATGCAGTACCAATTCATCTTCTAAGAACAGGAGATGAATTCTC 3597 ||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| || Sbjct 92707549 GTTTTACACAATTGAAAATGCAGTACCTATTCACCTTCTTAGAACAGGAGACGAATTTTC 92707490 Query 3598 CACAGGAATATATCACTTTGACACAAAACCACTAAAATTAACTCACTCATGGCAAACAAA 3657 |||||| | || ||||||||||||| ||||| ||| | || |||||||||||||| || Sbjct 92707489 CACAGGCACCTACTACTTTGACACAAAGCCACTTAAAATGACGCACTCATGGCAAACCAA 92707430 Query 3658 CAGATCTCTAGGACTGCCTCCAAAACTACTAACTGAACCTACCACAGAAGGAGACCAACA 3717 |||||| || || | || ||||| || |||||||| |||||||||||| | ||||| Sbjct 92707429 CAGATCACTTGGCTTACCACCAAAGCTTGCTACTGAACCAACCACAGAAGGACAACAACA 92707370 Query 3718 CCCAGGAACACTACCAGCAGCTA-ACACAAGAAAAGGTTATCACCAAACAATTAATAATA 3776 |||| ||| || |||||| | ||| | || | || || ||||| |||||||| | Sbjct 92707369 TACAGGCACATTAAAAGCAGCCACTGACAGGGAAGGCATA-CATCAAACCATTAATAACA 92707311 Query 3777 GCTACACAGAAGCAACAGCAATTAGGCCAGCTCAGGTAGGATATAATACACCATACATGA 3836 ||||||||||||| || || | |||||||| || || || || || || ||||| |||| Sbjct 92707310 GCTACACAGAAGCCACTGCTCTAAGGCCAGCACAAGTTGGTTACAACACTCCATATATGA 92707251 Query 3837 ATTTTGAATACTCCAATGGTGGACCATTTCTAACTCCTATAGTACCAACAGCAGACACAC 3896 | ||||||||||| |||| ||||||||| |||| || || || ||| ||||||| Sbjct 92707250 ACTTTGAATACTCAGATGGAGGACCATTTTTAACACCAATTGTGCCAGTCTATGACACAC 92707191 Query 3897 AATATAATGATGATGAACCAAATGGTGC-TATAAGATTTACAATGGATTACCAACATGGA 3955 |||| |||| ||||||||| |||||||| ||| ||| |||| |||| ||||||||||| Sbjct 92707190 AATACAATGCTGATGAACCCAATGGTGCATAT-AGAATTACTATGGGATACCAACATGGT 92707132 Query 3956 CACTTAACCACATCTTCACAAGAGCTAGAAAGATACACATTCAATCCACAAAGTAAATGT 4015 || || ||| | || ||||| | | |||||| | |||||| ||| ||| || Sbjct 92707131 CA---AATTACAACAGCAACTGAGCTGGGGCGCTACACACTAAATCCAATAAGCAAAGGT 92707075 Query 4016 GGAAGAGCTCCAAAGCAACAATTTAATCAACAGGCACCACTAAACCTAGAAAATACAAAT 4075 || |||||||| || ||| ||||||| ||| ||||||| | | ||||||||| Sbjct 92707074 GGTAGAGCTCCCAATCAAGAATTTAACCAATCTTCACCACTTCAGATGGAAAATACATTA 92707015 Query 4076 AATGGAACACTTTTACCTTCAGATCCAATAGGAGGGAAATCTAACATGCATTTCATGAAT 4135 ||||| ||| | ||||| | |||||||| || || ||| | |||| || || | || Sbjct 92707014 AATGGCACATTATTACCAACGGATCCAATTGGTGGAAAAACAGACATACACTTTACAAAC 92706955 Query 4136 ACACTCAATACATATGGACCATTAACAGCACTAAACAATACTGCACCTGTATTTCCAAAT 4195 ||||| || || ||||||||| | || ||||||||||| ||| |||| | | ||| ||| Sbjct 92706954 ACACTGAACACCTATGGACCACTTACTGCACTAAACAACACTCCACCAATTTATCCTAAT 92706895 Query 4196 GGTCAAATATGGGATAAAGAACTTGATACAGATCTAAAACCTAGACTACATGTTACAGCT 4255 || ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||| || ||| Sbjct 92706894 GGGCAAATTTGGGACAAAGAACTTGACGCAGATCTTAAACCAAGACTACATGTAACTGCT 92706835 Query 4256 CCATTTGTTTGTAAAAACAATCCACCAGGACAACTATTTGTAAAAATAGCACCAAACCTA 4315 || ||||||||||| |||||||||||||| || || ||||||||||| ||||| || || Sbjct 92706834 CCTTTTGTTTGTAAGAACAATCCACCAGGGCAGCTTTTTGTAAAAATTGCACCTAATCT- 92706776 Query 4316 ACAGATGATTTCAATGCTGACTCTCCTCAACAACCTAGAATAATAACTTATTCAAACTTT 4375 |||||||| ||||| |||||||| || || || ||||||||||| || || || ||| Sbjct 92706775 ---GATGATTTTAATGCAGACTCTCCACAGCAGCCAAGAATAATAACCTACTCTAATTTT 92706719 Query 4376 TGGTGGAAAGGAACACTAACATTCACAGCAAAAATGAGATCCAGTAATATGTGGAACCCT 4435 ||||||||||| ||||| ||||| ||||||| ||||||||| | ||||||||||| || Sbjct 92706718 TGGTGGAAAGGCACACTGACATTTACAGCAAGAATGAGATCTTGCAATATGTGGAATCCA 92706659 Query 4436 ATTCAACAACACACAACAACAGCAGAAAACATTGGTAACTATATTCCTACAAATATTGGT 4495 || || || ||||||||||| || ||||||| |||||| || || | || || || Sbjct 92706658 ATACATCAGCACACAACAACCAATGACAACATTGTTAACTACATGCCAAGCAACATAGGG 92706599 Query 4496 GGCATAAGAATGTTTCCAGAATATTCACAACTTATACCAAGAAAATTATACTA 4548 ||||| ||| ||| ||||||| | |||| ||||||||||||||| ||||||| Sbjct 92706598 GGCATGAGACTGTATCCAGAAATTCCACAGCTTATACCAAGAAAACTATACTA 92706546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16127046734400