Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq7 232 2e-57 >seq7 Length=104786220 Score = 232 bits (256), Expect = 2e-57 Identities = 313/433 (72%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 1135 AAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATC 1194 ||||| | ||||||||| | |||| | |||| |||| ||||||||||| ||||| Sbjct 92709670 AAAGTTTGCCATGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCAT- 92709612 Query 1195 TTACTCTGT---GGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAA 1251 ||| | | ||||| || || ||||||||| | |||| ||| | ||||| || Sbjct 92709611 --ACTGTTTCACGGACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATAGCCAAC 92709554 Query 1252 TTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGT 1311 || ||||| || ||| ||||||||| | |||| ||||| ||||| ||||||||| Sbjct 92709553 TTGGTTGGAAATGTAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTGT 92709494 Query 1312 GTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCT 1371 |||||||| |||| ||||| || ||||| |||||| | | |||||| ||| Sbjct 92709493 ACTAACAAAAATTTAATTTGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAAACCAA 92709434 Query 1372 TTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAA 1431 ||||||||||| || ||| | |||||| ||||||||||||| |||||||||||| Sbjct 92709433 TTCAAAGCCATTCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAAA 92709374 Query 1432 TCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTT 1491 || ||||||||||||||| | ||||| || ||||||||||| || ||||| | | || Sbjct 92709373 CAGATAGAACCAACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAATT 92709314 Query 1492 GGCACAGAACTCAAAACAGAACACAGACAACCAATAATGGATAG-ATGCTTAA---GAAT 1547 || || | | ||||||||| |||||||| | || || ||| |||| ||| Sbjct 92709313 GGTTGCGAGGAAAGACCAGAACACACCCAACCAATTAGAGACAGAATGGTTAACATCAAT 92709254 Query 1548 TGAACTCAAAAAC 1560 | |||| ||||| Sbjct 92709253 TTAACTAGAAAAC 92709241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15032711420280