Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_025825.1 Length=4928 Score E Sequences producing significant alignments: (Bits) Value seq7 109 2e-20 >seq7 Length=104786220 Score = 109 bits (120), Expect = 2e-20 Identities = 222/324 (69%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 2746 TGACACCTTGGTTTCTAGTGGATAGTAACGCTTGGGGCGTATGGATGAGTCCTAAAGACT 2805 |||| || ||| || || ||| || |||||||| |||||| | | |||| || | Sbjct 92707961 TGACTCCATGGAGCCTGGTAGATGCAAATGCTTGGGGTGTATGGTTTAATCCTGGTGATT 92707902 Query 2806 TTCAACAGATGAA-AACACTATGTAGTGAAATTGAGTTGGTTACTTTGGAACAAGAAATA 2864 || | || | |||| ||| | ||| | | ||||||| ||| || ||||||||| Sbjct 92707901 GGCAGCTAATTACCAACAACATG-ACAGAATTCAACTTGGTTAGTTTTGAGCAAGAAATA 92707843 Query 2865 GACAATGTAACTATAAAAACTGTAACAGAAAC--CAACCAAGGTAATGCATCTACAAAGC 2922 ||||| | ||||| | || ||| | |||||| || | ||||| Sbjct 92707842 TTTAATGTTGTGCTCAAAACAATTACTGAATCAGCAACCACAC-----CACCAACAAA-- 92707790 Query 2923 AATTTA--ACAATGATTTAACTGCATCTTTACAGGTTGCTTTGGATACTAACAACATATT 2980 ||| || |||||||||||||||| || ||| || | || || ||||||| ||| Sbjct 92707789 AATCTACAACAATGATTTAACTGCTAGCCTAATGGTAGCACTAGACACAAACAACACATT 92707730 Query 2981 GCCATATACTCCAGCTGCGCCATTAGGGGAAACACTAGGCTTTGTTCCTTGGAGAGCAAC 3040 |||||| ||||| ||||| ||| | | |||||||| || ||| ||| ||| | |||| Sbjct 92707729 GCCATACACTCCTGCTGCACCAAGATGTGAAACACTTGGTTTTTATCCATGGCTACCAAC 92707670 Query 3041 CAAACCAACCCAATATAGATACTA 3064 |||||||| || ||||||||||| Sbjct 92707669 AAAACCAACTCACTATAGATACTA 92707646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15656674537980