Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq7 269 8e-69 >seq7 Length=104786220 Score = 269 bits (298), Expect = 8e-69 Identities = 330/450 (73%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 1200 AAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATC 1259 ||||| | |||||||| | |||| | |||| |||| |||||||||||||| || Sbjct 92709670 AAAGTTTGCCATGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCATA 92709611 Query 1260 TTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTG 1319 | || || ||||| ||||||||||||| | ||||||||| | || || | ||| Sbjct 92709610 CTGTTTCACGGACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATAGCCAACTTG 92709551 Query 1320 GTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGC 1379 ||||| |||||||| ||||||||| | ||||| ||||||||||| || || |||| Sbjct 92709550 GTTGGAAATGTAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTGTACT 92709491 Query 1380 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTT 1439 |||||||| |||| ||||| || ||||| || |||||| || ||||||||||||||| Sbjct 92709490 AACAAAAATTTAATTTGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAAACCAATTC 92709431 Query 1440 AAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACC 1499 ||||| || || ||| | || ||| | ||||||||||| ||||| |||||| Sbjct 92709430 AAAGCCATTCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAAACAG 92709371 Query 1500 ATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGG 1559 || |||||||||||||| ||||||| |||||||||||||| |||| ||| | || Sbjct 92709370 ATAGAACCAACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAATTGGT 92709311 Query 1560 TCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGATGTATTCGTGTACATC-- 1617 | || ||||||||||| | |||||||| | ||||| | | || ||||| Sbjct 92709310 TGCGAGGAAAGACCAGAACACACCCAACCAATTAGAGACAG----AATGGTTAACATCAA 92709255 Query 1618 --TGACCACAAGACTTCCTGGCGACTTTGG 1645 | || | || |||||| || |||||||| Sbjct 92709254 TTTAACTAGAAAACTTCCCGGTGACTTTGG 92709225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14648734117080