Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq7 322 1e-84 >seq7 Length=104786220 Score = 322 bits (356), Expect = 1e-84 Identities = 341/447 (76%), Gaps = 2/447 (0%) Strand=Plus/Minus Query 1308 AAAGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGAAACACAATT 1367 ||||| | |||||||||| |||| | |||| ||| || ||||||||||| || Sbjct 92709670 AAAGTTTGCCATGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCATA 92709611 Query 1368 CTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCTCAGTTA 1427 || || || ||||| ||| ||||||||| | |||||||| | ||||| | || Sbjct 92709610 CTGTTTCACGGACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATAGCCAACTTG 92709551 Query 1428 GTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAATGATTGTAGC 1487 ||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct 92709550 GTTGGAAATGTAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTGTACT 92709491 Query 1488 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTC 1547 |||||||| |||| ||||| || ||||| || |||||| || |||||||||||||||| Sbjct 92709490 AACAAAAATTTAATTTGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAAACCAATTC 92709431 Query 1548 AAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAACC 1607 ||||| || |||||| | |||||| | ||||||||||| |||||||||||| Sbjct 92709430 AAAGCCATTCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAAACAG 92709371 Query 1608 ATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGGTCGTGGTAGGG 1667 |||||||||||||||||| | ||||||||||||||||||||||| || ||| | || Sbjct 92709370 ATAGAACCAACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAATTGGT 92709311 Query 1668 TCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAG-ATGTATACAAATACGCTT 1726 | || ||||| ||||||| |||||||| | ||||| ||| || | || || Sbjct 92709310 TGCGAGGAAAGACCAGAACACACCCAACCAATTAGAGACAGAATGGTTA-ACATCAATTT 92709252 Query 1727 AACCACAAGACTTCCTGGAGACTTTGG 1753 ||| | || |||||| || |||||||| Sbjct 92709251 AACTAGAAAACTTCCCGGTGACTTTGG 92709225 Score = 82.4 bits (90), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 2352 CTTCttttttttACAGGCTTAACCCTACCAGGGTATAACTACCTAGGCCCTGGAAATACA 2411 ||| ||||| || ||| |||| || || || ||||| ||||| || || |||||| || Sbjct 92708725 CTTTTTTTTATTCTAGGTCTAACACTTCCTGGATATAAATACCTTGGTCCGGGAAATTCA 92708666 Query 2412 GATTTCACCAAAA--AACCTACTAATCCATCTGACGAAGCAGCACGACGACACGACCTAG 2469 || ||||| |||| |||||||| || |||| ||||| | |||||| || Sbjct 92708665 C--TTGACCAAGGTGAACCAACTAATCCTTCAGACGCTGCAGCTAAAGAACACGATGAAG 92708608 Query 2470 CATATGGAAGCTATATaaaaaaaGGACACAATCCATATTTCAACTT--CAACAAAGCAGA 2527 | |||| || || ||| ||| | ||||| || | |||| || | ||||| Sbjct 92708607 CTTATGACCAATACATCAAATCTGGAAAAAATCCTTACCTATACTTTTCAGCT--GCAGA 92708550 Query 2528 TAAATCCTTCATAAAAGAAACTGACCAAGCAAAAGACTACGGAGGA 2573 || ||||| |||||||| || |||||||||||||||| ||| Sbjct 92708549 CGAAAAATTCATCAAAGAAACAGAAAAAGCAAAAGACTACGGCGGA 92708504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14715930145140