Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq7 307 3e-80 >seq7 Length=104786220 Score = 307 bits (340), Expect = 3e-80 Identities = 314/406 (77%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 1165 AAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATT 1224 ||||| | ||||||||| | |||| | |||| |||| ||||||||||||||||| Sbjct 92709670 AAAGTTTGCCATGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCAT- 92709612 Query 1225 CTACTGTGT---GGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAA 1281 ||||| | || || || ||||| |||||| | ||||||||| | ||| ||||| Sbjct 92709611 --ACTGTTTCACGGACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATA-GCCAA 92709555 Query 1282 CT-GGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTG 1340 || |||||| ||||| |||||||||||||| |||||||||||||||| || |||||||| Sbjct 92709554 CTTGGTTGGAAATGTAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTG 92709495 Query 1341 CAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCA 1400 | ||||||||| |||| ||| | || ||||||||||||||| | ||||||||||| Sbjct 92709494 TACTAACAAAAATTTAATTTGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAAACCA 92709435 Query 1401 ATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAA 1460 ||||||| | || || ||| | |||||| |||||||||||||||||||||| || Sbjct 92709434 ATTCAAAGCCATTCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAA 92709375 Query 1461 AGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGAT 1520 | | || ||||||||||||| ||||||| |||||||||||||| || ||||| | || Sbjct 92709374 ACAGATAGAACCAACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAAT 92709315 Query 1521 AGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGA 1566 || || || | ||||||||||| ||||| || | |||||| Sbjct 92709314 TGGTTGCGAGGAAAGACCAGAACACACCCAACCAATTAGAGACAGA 92709269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15135105367800