Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq7 264 3e-67 >seq7 Length=104786220 Score = 264 bits (292), Expect = 3e-67 Identities = 326/446 (73%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 1258 AAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATC 1317 ||||||| ||||||||| | || | |||| |||| |||||| ||||||| || Sbjct 92709670 AAAGTTTGCCATGCAATTACGTGCGTGATGAACAGACAAGGTGGCAAAAGAAACACCATA 92709611 Query 1318 CTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTA 1377 || | ||||| || ||| || |||||| | |||||||| | ||||| || | Sbjct 92709610 CTGTTTCACGGACCAGCTTCTACTGGAAAAAGCATTATAGCACAACATATAGCCAACTTG 92709551 Query 1378 GTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGC 1437 ||||| ||||| || ||||| ||||| |||||| |||||||||||| |||||||||| Sbjct 92709550 GTTGGAAATGTAGGTTGCTACAATGCTGCAAATGTAAACTTTCCATTTAATGACTGTACT 92709491 Query 1438 AACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTT 1497 |||||||| |||| ||| | || |||||||| |||||| |||||||||||||| Sbjct 92709490 AACAAAAATTTAATTTGGATTGAGGAAGCTGGCAACTTTTCAAATCAAGTAAACCAATTC 92709431 Query 1498 AAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCA 1557 ||||| ||| || || | |||||| | ||||||||||| |||||||||||| Sbjct 92709430 AAAGCCATTCGCTCGGGTCAAACCATCAGAATTGACCAAAAAGGAAAAGGCAGCAAACAG 92709371 Query 1558 ATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGT 1617 || |||||||||||||| | ||||| || |||||||| || |||| ||||| ||||| Sbjct 92709370 ATAGAACCAACTCCAGTATTAATGACCACAAATGAAGACATTACAAAAGTCAGAATTGGT 92709311 Query 1618 TCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTA 1677 | || || ||||||||||| ||||| || | |||||| || | ||| || || Sbjct 92709310 TGCGAGGAAAGACCAGAACACACCCAACCAATTAGAGACAGAATGGTTAACATCAATTTA 92709251 Query 1678 AACAATAGACTAAATGGTGACTTTGG 1703 | | | ||| ||||||||||| Sbjct 92709250 ACTAGAAAACTTCCCGGTGACTTTGG 92709225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14731929199440