Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq11436 87.8 5e-14 >seq11436 Length=398513 Score = 87.8 bits (96), Expect = 5e-14 Identities = 114/154 (74%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 2995 CTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAG 3054 |||||| ||| |||||||| || | ||||| |||| ||| || || | |||| Sbjct 106357 CTTTGGGTACCACACCCCCTAGGCCAATACTGACTC-AACCATTTC-ACTGCTCCAGGAG 106300 Query 3055 CCCCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAG 3114 |||| || || | |||| ||||| | ||||||||||| |||||||||| |||| Sbjct 106299 CCCCAGAAACAAGTAAAGGCTCATTAGTAACTACTGGGGATTCAGACCCCAAAATCTCAA 106240 Query 3115 AGTCAAAATCTTCAACATTCAAGTCAAAGAGGTC 3148 |||| | ||||||| ||| |||||||| |||||| Sbjct 106239 AGTC-AGATCTTCACCATCCAAGTCAAGGAGGTC 106207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14683184063710