Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq75233 91.5 4e-15 >seq75233 Length=6300 Score = 91.5 bits (100), Expect = 4e-15 Identities = 175/255 (69%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 1296 AAGAGGAACACCATCTGG-----CTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCG 1350 ||||| ||||| | |||| | | ||| ||||| || ||| | ||||| |||| | Sbjct 2031 AAGAGAAACACAACCTGGTCATACCTTATGGACCTGCCACCACCAGCAAGACTGACATTG 2090 Query 1351 CGGAGGCCATAGCCCACACTGTG--CCCTTCTACGGGTGCGTAAACTGGACCAATGAGAA 1408 | |||| || ||||| ||| ||| ||| || || | |||| ||| || | Sbjct 2091 CCAAGGCTATTGCCCA---TGTAGACCCCTCTGTGGCCAGGTCACCTGGGCCAGCAAGGA 2147 Query 1409 CTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468 |||||||||||| || || ||||||||| | || ||| || || ||||| || Sbjct 2148 CTTTCCCTTCAATAGTTGAGTGGACAAGATGACTCTTTGACAGGAAGAAGGAAAGATTAC 2207 Query 1469 CGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCA 1528 || |||| ||||||| | |||| ||||| || |||||| |||||| | | ||| || Sbjct 2208 ATCCCAGGTGGTGGAGTTGTCCAAGGCCATCCTGGGAGGATCCAAGGTCCACAAGGA-CA 2266 Query 1529 GAAATGCAAGTCCTC 1543 ||| || || ||||| Sbjct 2267 GAAGTGTAAATCCTC 2281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14841397112580