Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq75233 80.6 8e-12 >seq75233 Length=6300 Score = 80.6 bits (88), Expect = 8e-12 Identities = 172/253 (68%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 1293 AAGAGGAACACCATCTGGCT----CTT-TGGGCCGGCCACGACGGGTAAAACCAACATCG 1347 ||||| ||||| | |||| ||| ||| || ||||| || | || || |||| | Sbjct 2031 AAGAGAAACACAACCTGGTCATACCTTATGGACCTGCCACCACCAGCAAGACTGACATTG 2090 Query 1348 CGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAACT 1407 | | || || ||||| | | |||| || ||| || | |||| ||| || ||| Sbjct 2091 CCAAGGCTATTGCCCATGTAGACCCCT-CTGTGGCCAGGTCACCTGGGCCAGCAAGGACT 2149 Query 1408 TTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGG 1467 |||||||||| ||| || ||||||||| | || ||| || || ||||| || Sbjct 2150 TTCCCTTCAATAGTTGAGTGGACAAGATGACTCTTTGACAGGAAGAAGGAAAGATTACAT 2209 Query 1468 CCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAA 1527 || |||| |||||| |||||||||| ||||| ||| |||||| | | ||| || | Sbjct 2210 CCCAGGTGGTGGAGTTGTCCAAGGCCATCCTGGGAGGATCCAAGGTCCACAAGGA-CAGA 2268 Query 1528 AGTGCAAGTCATC 1540 |||| || || || Sbjct 2269 AGTGTAAATCCTC 2281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14991600743995