Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_001729.1
Length=4726
Score E
Sequences producing significant alignments: (Bits) Value
seq75233 80.6 8e-12
>seq75233
Length=6300
Score = 80.6 bits (88), Expect = 8e-12
Identities = 172/253 (68%), Gaps = 7/253 (3%)
Strand=Plus/Plus
Query 1293 AAGAGGAACACCATCTGGCT----CTT-TGGGCCGGCCACGACGGGTAAAACCAACATCG 1347
||||| ||||| | |||| ||| ||| || ||||| || | || || |||| |
Sbjct 2031 AAGAGAAACACAACCTGGTCATACCTTATGGACCTGCCACCACCAGCAAGACTGACATTG 2090
Query 1348 CGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAACT 1407
| | || || ||||| | | |||| || ||| || | |||| ||| || |||
Sbjct 2091 CCAAGGCTATTGCCCATGTAGACCCCT-CTGTGGCCAGGTCACCTGGGCCAGCAAGGACT 2149
Query 1408 TTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGG 1467
|||||||||| ||| || ||||||||| | || ||| || || ||||| ||
Sbjct 2150 TTCCCTTCAATAGTTGAGTGGACAAGATGACTCTTTGACAGGAAGAAGGAAAGATTACAT 2209
Query 1468 CCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAA 1527
|| |||| |||||| |||||||||| ||||| ||| |||||| | | ||| || |
Sbjct 2210 CCCAGGTGGTGGAGTTGTCCAAGGCCATCCTGGGAGGATCCAAGGTCCACAAGGA-CAGA 2268
Query 1528 AGTGCAAGTCATC 1540
|||| || || ||
Sbjct 2269 AGTGTAAATCCTC 2281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14991600743995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |