Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq75233 89.7 2e-14 >seq75233 Length=6300 Score = 89.7 bits (98), Expect = 2e-14 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1243 GGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 |||| ||| |||||| ||||||| |||| || ||||||||||||||| | || | | Sbjct 2060 GGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCATGTAGACCCCT-C 2118 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATG 1362 | ||| || | |||| ||| | || ||||||| ||||| || || || || ||| Sbjct 2119 TGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACAAGATG 2178 Query 1363 ATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATT 1422 | | | || ||| || || || || || || | |||||||| ||||||| || Sbjct 2179 ACTCTTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATC 2238 Query 1423 CTGGGAGGATC 1433 ||||||||||| Sbjct 2239 CTGGGAGGATC 2249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14889334441755