Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq75233 102 2e-18 seq55070 91.5 4e-15 >seq75233 Length=6300 Score = 102 bits (112), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 1343 TACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTG--C 1400 || ||||| ||||| ||| ||||||| |||| || |||| || ||||| ||| | Sbjct 2057 TATGGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCA---TGTAGAC 2113 Query 1401 CCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACA 1460 || | | ||| || | |||| ||| | |||||||||| ||| || ||||||| Sbjct 2114 CCCTCTGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACA 2173 Query 1461 AAATG-CTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAG 1519 | ||| ||| |||| ||| || |||||||| || | ||||||| || | ||||| Sbjct 2174 AGATGACTC-TTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAG 2232 Query 1520 GCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTC 1569 ||||||||||| || || ||||| | || ||||| ||||||||||| Sbjct 2233 GCCATCCTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTC 2281 >seq55070 Length=1035858 Score = 91.5 bits (100), Expect = 4e-15 Identities = 118/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 2991 CCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACT 3050 |||| |||||||||| |||||| |||| ||||||| |||| ||||||| || || Sbjct 118060 CCTATTTTGGATACAACACCCC-TGGGCCAGTGTTGACTTCAACCACTTCCACTGCTCCT 118118 Query 3051 GGAGCCCCC-GAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCC 3109 ||||||||| ||||| | | | || |||| ||||| |||| |||||| ||| | Sbjct 118119 GGAGCCCCCAGAGACCAGTAGTGGCTTATCAGTAACTATTGGGAATTCAGATCCCAAAAC 118178 Query 3110 CTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTC 3148 |||| |||| | |||||||||| ||| | || ||||| Sbjct 118179 CTCAAAGTC-ATATCTTCAACACCCAACTAAATAAGGTC 118216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14723151700615