Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006152.1
Length=4642
Score E
Sequences producing significant alignments: (Bits) Value
seq75233 102 2e-18
seq55070 91.5 4e-15
>seq75233
Length=6300
Score = 102 bits (112), Expect = 2e-18
Identities = 164/230 (71%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 1343 TACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTG--C 1400
|| ||||| ||||| ||| ||||||| |||| || |||| || ||||| ||| |
Sbjct 2057 TATGGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCA---TGTAGAC 2113
Query 1401 CCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACA 1460
|| | | ||| || | |||| ||| | |||||||||| ||| || |||||||
Sbjct 2114 CCCTCTGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACA 2173
Query 1461 AAATG-CTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAG 1519
| ||| ||| |||| ||| || |||||||| || | ||||||| || | |||||
Sbjct 2174 AGATGACTC-TTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAG 2232
Query 1520 GCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTC 1569
||||||||||| || || ||||| | || ||||| |||||||||||
Sbjct 2233 GCCATCCTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTC 2281
>seq55070
Length=1035858
Score = 91.5 bits (100), Expect = 4e-15
Identities = 118/159 (74%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 2991 CCTACTTTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACT 3050
|||| |||||||||| |||||| |||| ||||||| |||| ||||||| || ||
Sbjct 118060 CCTATTTTGGATACAACACCCC-TGGGCCAGTGTTGACTTCAACCACTTCCACTGCTCCT 118118
Query 3051 GGAGCCCCC-GAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCC 3109
||||||||| ||||| | | | || |||| ||||| |||| |||||| ||| |
Sbjct 118119 GGAGCCCCCAGAGACCAGTAGTGGCTTATCAGTAACTATTGGGAATTCAGATCCCAAAAC 118178
Query 3110 CTCAGAGTCAAAATCTTCAACATTCAAGTCAAAGAGGTC 3148
|||| |||| | |||||||||| ||| | || |||||
Sbjct 118179 CTCAAAGTC-ATATCTTCAACACCCAACTAAATAAGGTC 118216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14723151700615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |