Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq75233 105 2e-19 >seq75233 Length=6300 Score = 105 bits (116), Expect = 2e-19 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 1332 TGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTT 1391 ||| || ||||||||| ||||||| ||||||| | || || ||||| | | |||| Sbjct 2059 TGGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCATGTAGACCCCT- 2117 Query 1392 CTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGAT 1451 || ||| |||| |||| ||| || ||||||||||||| ||| || |||||||| Sbjct 2118 CTGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACAAGAT 2177 Query 1452 GGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCAT 1511 | | || ||| || || ||||| || || |||| ||||||| |||||||||| Sbjct 2178 GACTCTTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCAT 2237 Query 1512 TCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCC 1571 || || || |||||| | | ||| || ||||| || || ||| ||| | ||||| Sbjct 2238 CCTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTCCCAGCAG-TTGACCC 2295 Query 1572 CA 1573 || Sbjct 2296 CA 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14975621634270