Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006260.1
Length=4721
Score E
Sequences producing significant alignments: (Bits) Value
seq75233 105 2e-19
>seq75233
Length=6300
Score = 105 bits (116), Expect = 2e-19
Identities = 171/242 (71%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 1332 TGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTT 1391
||| || ||||||||| ||||||| ||||||| | || || ||||| | | ||||
Sbjct 2059 TGGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCATGTAGACCCCT- 2117
Query 1392 CTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGAT 1451
|| ||| |||| |||| ||| || ||||||||||||| ||| || ||||||||
Sbjct 2118 CTGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACAAGAT 2177
Query 1452 GGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCAT 1511
| | || ||| || || ||||| || || |||| ||||||| ||||||||||
Sbjct 2178 GACTCTTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCAT 2237
Query 1512 TCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCC 1571
|| || || |||||| | | ||| || ||||| || || ||| ||| | |||||
Sbjct 2238 CCTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTCCCAGCAG-TTGACCC 2295
Query 1572 CA 1573
||
Sbjct 2296 CA 2297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14975621634270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |