Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq75233 114 4e-22 >seq75233 Length=6300 Score = 114 bits (126), Expect = 4e-22 Identities = 173/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 1231 TGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCCCACGCCGTGCCCTT 1290 |||||| ||||||||| ||||||| ||||||| | || || ||||| | | |||| Sbjct 2059 TGGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCATGTAGACCCCT- 2117 Query 1291 CTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGAT 1350 || ||| |||| |||| ||| || |||||||||||||| ||| || |||||||| Sbjct 2118 CTGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACAAGAT 2177 Query 1351 GGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCAT 1410 | | || ||| || || ||||| || || |||| ||||||| |||||||||| Sbjct 2178 GACTCTTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCAT 2237 Query 1411 TCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCC 1470 || || || |||||| | | ||| || ||||| || || ||| ||| | ||||| Sbjct 2238 CCTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTCCCAGCAG-TTGACCC 2295 Query 1471 CA 1472 || Sbjct 2296 CA 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13927392036310