Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_014468.1
Length=4286
Score E
Sequences producing significant alignments: (Bits) Value
seq75233 91.5 4e-15
>seq75233
Length=6300
Score = 91.5 bits (100), Expect = 4e-15
Identities = 167/241 (69%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 1178 GGGCCGGCCACGACCGGCAAGACGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTC 1237
|| || ||||| ||| ||||||| || | ||| |||| || ||| | |||| |
Sbjct 2060 GGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCATGTAGACCCCT-C 2118
Query 1238 TACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATG 1297
| ||| |||| |||| ||| | || |||| |||||||| || ||||||||||||
Sbjct 2119 TGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACAAGATG 2178
Query 1298 ATCATCTGGTGGGAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATC 1357
| | || ||| || || ||||| || ||| |||| || ||| |||||||||||
Sbjct 2179 ACTCTTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATC 2238
Query 1358 CTCGGCGGCAGCAAGGTGCGCGTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCC 1417
|| || || |||||| | | || |||||||| || ||| |||||| | || |||
Sbjct 2239 CTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTCCCAGCAG-TTGACCCC 2296
Query 1418 A 1418
|
Sbjct 2297 A 2297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13585439088195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |