Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq75233 91.5 4e-15 >seq75233 Length=6300 Score = 91.5 bits (100), Expect = 4e-15 Identities = 167/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 1178 GGGCCGGCCACGACCGGCAAGACGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTC 1237 || || ||||| ||| ||||||| || | ||| |||| || ||| | |||| | Sbjct 2060 GGACCTGCCACCACCAGCAAGACTGACATTGCCAAGGCTATTGCCCATGTAGACCCCT-C 2118 Query 1238 TACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATG 1297 | ||| |||| |||| ||| | || |||| |||||||| || |||||||||||| Sbjct 2119 TGTGGCCAGGTCACCTGGGCCAGCAAGGACTTTCCCTTCAATAGTTGAGTGGACAAGATG 2178 Query 1298 ATCATCTGGTGGGAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATC 1357 | | || ||| || || ||||| || ||| |||| || ||| ||||||||||| Sbjct 2179 ACTCTTTGACAGGAAGAAGGAAAGATTACATCCCAGGTGGTGGAGTTGTCCAAGGCCATC 2238 Query 1358 CTCGGCGGCAGCAAGGTGCGCGTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCC 1417 || || || |||||| | | || |||||||| || ||| |||||| | || ||| Sbjct 2239 CTGGGAGGATCCAAGGTCCACAAGGA-CAGAAGTGTAAATCCTCCCAGCAG-TTGACCCC 2296 Query 1418 A 1418 | Sbjct 2297 A 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13585439088195