Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq64 383 5e-103 >seq64 Length=12756018 Score = 383 bits (424), Expect = 5e-103 Identities = 604/860 (70%), Gaps = 15/860 (2%) Strand=Plus/Plus Query 960 CCGGTGATCAGATCAAAAACTTCAGCCA--GGTACATGGAGCTGGTCGGGTGGCTCGTGG 1017 |||||||||||| | || | ||||| | || ||||| || ||| |||||||||| Sbjct 8428303 CCGGTGATCAGAACTAAGAGG--AGCCAAAGATATATGGATCTTGTCAAATGGCTCGTGG 8428360 Query 1018 ACAAGGGGATTACCTCGGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCATACATCTCCT 1077 | ||||| |||||||| || || || ||||| |||| ||| | | || | | | || Sbjct 8428361 AGAAGGGCATTACCTCAGAAAAACAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCT 8428420 Query 1078 TCAATGCGGCCTCCAACTCGCGGTCCCAAATCAAGGCTGCCTTGGACAATGCGGGAAAGA 1137 | ||||| | |||| | | ||||||| || ||| ||||||| | | ||| Sbjct 8428421 TTAATGCAACAGGCAACACCAGAAGCCAAATCCGAGCGGCCCTGGACAACACCAGGCAGA 8428480 Query 1138 TTATGAGCCTGACTAAAACCGCCCCCGACTACCTGGT-GGGCCAGCAGCCCGT--GGAGG 1194 ||| |||||| || || || || ||||| ||| || | |||| | ||| Sbjct 8428481 AACTGATTTGGACTAAGACAGCTAAAGATTATCTGGTAGGGTCATCGGCCCCTCCGGAAA 8428540 Query 1195 ACATTTCCAGCAATCGGATTTATAAAATTTTGGAACTAAACGGGTACGATCCCCAATATG 1254 |||| || |||||||| || | || || || | || || |||||||| | || | Sbjct 8428541 ACATGACCCAAAATCGGATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACG 8428600 Query 1255 CGGCTTCCGTCTTTCTGGGATGG----GCCACGAAAAAGTTCGGCAAGAGGAACACCATC 1310 | | | | | | |||||| |||| || || || || | ||||||||| Sbjct 8428601 CTGGCAGCATACTGGTTGGATGGTGTAGCCATCAA----TTTGGAAAACGAAACACCATC 8428656 Query 1311 TGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACT 1370 ||| ||||||| || || || || || || |||||||| || |||||||| |||||| | Sbjct 8428657 TGGTTGTTTGGCCCCGCGACCACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCG 8428716 Query 1371 GTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTC 1430 |||||| ||| || || || |||||||| || ||||||||||| ||||| ||||| | Sbjct 8428717 GTGCCCGCCTATGGCTGTGTCAACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTT 8428776 Query 1431 GACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCC 1490 ||||||||| | |||||||||||||| |||| |||||| ||||||| ||||| |||||| Sbjct 8428777 GACAAGATGATTATCTGGTGGGAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCC 8428836 Query 1491 AAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAG 1550 || |||||||| || || ||||| ||||| ||||| |||||| |||| || || || | Sbjct 8428837 AAGGCCATTCTTGGGGGCAGCAAAGTGCGTGTGGATCAGAAAGGCAAATCTTCTGCTGAA 8428896 Query 1551 ATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGG 1610 | | || ||||| || ||| | ||| |||||| |||||||| | ||| || | Sbjct 8428897 GTGGCCCAAACTCCTGTCATCATGACCAGCAACACTGACATGTGCACAGTGGATGGTAGA 8428956 Query 1611 AACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAATTTGAACTC 1670 | || || | || |||| |||||| | ||||| || |||||||||||||| || Sbjct 8428957 ATTTCGACCCCGGAGGAGCACCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGAGCTG 8429016 Query 1671 ACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAAGCAGGAAGTCAAAGACTTTTTC 1730 || || ||| | | |||||||| || ||||||| ||||| |||| |||||||||| Sbjct 8429017 ACACGTGCCCTGAAGCCGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTTC 8429076 Query 1731 CGGTGGGCAAAGGATCACGTGGTTGAGGTGGAGCATGAATTCTACGTCAAAAAGGGTGGA 1790 |||||||| |||||| | || ||| | ||||||| |||| || | || Sbjct 8429077 CGGTGGGCTTCTGATCACAGGAGGGAAGTGACTGAGGAATTCTTAGTCAGGAAAGTGGGG 8429136 Query 1791 GCCAAGAAAAGACCCGCCCC 1810 ||| ||| ||||||||||| Sbjct 8429137 TCCAGGAAGAGACCCGCCCC 8429156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14859640277100