Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq312 176 1e-40 seq88 111 5e-21 seq109 105 2e-19 >seq312 Length=1426583 Score = 176 bits (194), Expect = 1e-40 Identities = 226/309 (73%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 1427 AGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTA-TTATTG 1485 ||| ||| |||| || ||||||| || ||||||||||||||||| ||| || |||| | Sbjct 1344780 AGGTAAATGAAACACAATTTTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAG 1344721 Query 1486 CACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACT 1545 | ||| ||| | |||||| |||||||| ||||| || || |||||||| | Sbjct 1344720 CTCAAAAAATATGTGAGTTAGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAAT 1344661 Query 1546 TTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTG 1605 |||| |||||||| || || || || | || | |||||||||| || ||| | | Sbjct 1344660 TTCCTTTTAATGATTGCTGCAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAG 1344601 Query 1606 GACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAA 1665 |||| ||||||||||| |||||||| || || || |||| || | | | |||| Sbjct 1344600 GACAACAAGTAAACCAATTTAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAA 1344541 Query 1666 AAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACA 1725 |||||||||| |||||| || |||||||| ||||| || ||||||| ||||| ||| Sbjct 1344540 AAGGAAAAGGTAGCAAATCCATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACA 1344481 Query 1726 TTA-CAGTG 1733 | | ||||| Sbjct 1344480 TCACCAGTG 1344472 >seq88 Length=11899542 Score = 111 bits (122), Expect = 5e-21 Identities = 186/268 (69%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 1521 TGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACT-TGAT 1579 ||||| ||| |||| |||| || |||||||||||||| ||| |||||| || | | || Sbjct 366748 TGCTACAATCCAGCAAATGACAATTTTCCATTTAATGATTGTTGCAACAAAAAATATTAT 366807 Query 1580 TTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTC 1639 ||| |||||||||| || || | ||||| || ||| ||| ||||| || ||| || Sbjct 366808 CTGGATAGAAGAAGCAGGAAATCTAGGACAATAAATAAGCCAATTTAAGGCAATTATGTC 366867 Query 1640 TGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACC 1699 || |||| | | || || |||||||||||||||||| |||| || || || Sbjct 366868 AGGGCAAAGCACAAAACTAGACCAGAAAGGAAAAGGCAGCAAATCCGTTGAGCCCACTCC 366927 Query 1700 AGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACC 1759 | || |||| || || | |||| | || || ||||| || || ||| || || Sbjct 366928 TATTATTATGATCAGTAACAAAGACATAATTGTAGTAAGAATTGGATGTGAAATCAGGCC 366987 Query 1760 AGAACACACTCAACCAATCAGAGACAGA 1787 ||||| | |||| || | | ||||| Sbjct 366988 TGAACATGGTGAACCTATTAAACACAGA 367015 >seq109 Length=10228628 Score = 105 bits (116), Expect = 2e-19 Identities = 213/312 (68%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 1540 TAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTA 1599 ||||||||||||||||||| ||| | ||| ||| | || || |||| |||| | Sbjct 3858163 TAAACTTTCCATTTAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAAGTGGAGC 3858104 Query 1600 ACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTG 1659 | || | ||||||||| ||||||| ||||| || || || ||| || | | | Sbjct 3858103 AGTTATGTCAGCAAGTAGACCAGTTCAAAGCAATAATATCAGG-GAAAGCATCAGGCTGG 3858045 Query 1660 ATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATG 1719 | |||||||||| || |||||| || |||||||| ||||| || ||||| |||| | Sbjct 3858044 ACAAAAAAGGAAAGGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACTTCAAAGG 3857985 Query 1720 AGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAATCA 1779 | ||| || || || || ||||| ||| || || |||||| | ||||| | | Sbjct 3857984 AAGACACCACCACAGTGAGGATTGGCTGTGAAACCAGGCCTAAACACAGTGAACCAGTTA 3857925 Query 1780 GAGACAGA-ATGCTTAACATTCATCTAACACATACCTTGCCTGGTGACTTTGGTTTGGTT 1838 ||||| ||| ||||| || || | || ||| |||| | |||||||| | Sbjct 3857924 AGCACAGATGTGC-CAACATAAGACTTACCAAGACATTGGATGGTAAGTTTGGTTTAATA 3857866 Query 1839 GACAAAAATGAA 1850 ||| |||| ||| Sbjct 3857865 GACCAAAAAGAA 3857854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16363522906350