Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_001510.1
Length=5149
Score E
Sequences producing significant alignments: (Bits) Value
seq312 176 1e-40
seq88 111 5e-21
seq109 105 2e-19
>seq312
Length=1426583
Score = 176 bits (194), Expect = 1e-40
Identities = 226/309 (73%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 1427 AGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTA-TTATTG 1485
||| ||| |||| || ||||||| || ||||||||||||||||| ||| || |||| |
Sbjct 1344780 AGGTAAATGAAACACAATTTTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAG 1344721
Query 1486 CACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACT 1545
| ||| ||| | |||||| |||||||| ||||| || || |||||||| |
Sbjct 1344720 CTCAAAAAATATGTGAGTTAGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAAT 1344661
Query 1546 TTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTG 1605
|||| |||||||| || || || || | || | |||||||||| || ||| | |
Sbjct 1344660 TTCCTTTTAATGATTGCTGCAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAG 1344601
Query 1606 GACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAA 1665
|||| ||||||||||| |||||||| || || || |||| || | | | ||||
Sbjct 1344600 GACAACAAGTAAACCAATTTAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAA 1344541
Query 1666 AAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACA 1725
|||||||||| |||||| || |||||||| ||||| || ||||||| ||||| |||
Sbjct 1344540 AAGGAAAAGGTAGCAAATCCATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACA 1344481
Query 1726 TTA-CAGTG 1733
| | |||||
Sbjct 1344480 TCACCAGTG 1344472
>seq88
Length=11899542
Score = 111 bits (122), Expect = 5e-21
Identities = 186/268 (69%), Gaps = 1/268 (0%)
Strand=Plus/Plus
Query 1521 TGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACT-TGAT 1579
||||| ||| |||| |||| || |||||||||||||| ||| |||||| || | | ||
Sbjct 366748 TGCTACAATCCAGCAAATGACAATTTTCCATTTAATGATTGTTGCAACAAAAAATATTAT 366807
Query 1580 TTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTC 1639
||| |||||||||| || || | ||||| || ||| ||| ||||| || ||| ||
Sbjct 366808 CTGGATAGAAGAAGCAGGAAATCTAGGACAATAAATAAGCCAATTTAAGGCAATTATGTC 366867
Query 1640 TGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACC 1699
|| |||| | | || || |||||||||||||||||| |||| || || ||
Sbjct 366868 AGGGCAAAGCACAAAACTAGACCAGAAAGGAAAAGGCAGCAAATCCGTTGAGCCCACTCC 366927
Query 1700 AGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACC 1759
| || |||| || || | |||| | || || ||||| || || ||| || ||
Sbjct 366928 TATTATTATGATCAGTAACAAAGACATAATTGTAGTAAGAATTGGATGTGAAATCAGGCC 366987
Query 1760 AGAACACACTCAACCAATCAGAGACAGA 1787
||||| | |||| || | | |||||
Sbjct 366988 TGAACATGGTGAACCTATTAAACACAGA 367015
>seq109
Length=10228628
Score = 105 bits (116), Expect = 2e-19
Identities = 213/312 (68%), Gaps = 3/312 (1%)
Strand=Plus/Minus
Query 1540 TAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTA 1599
||||||||||||||||||| ||| | ||| ||| | || || |||| |||| |
Sbjct 3858163 TAAACTTTCCATTTAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAAGTGGAGC 3858104
Query 1600 ACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTG 1659
| || | ||||||||| ||||||| ||||| || || || ||| || | | |
Sbjct 3858103 AGTTATGTCAGCAAGTAGACCAGTTCAAAGCAATAATATCAGG-GAAAGCATCAGGCTGG 3858045
Query 1660 ATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATG 1719
| |||||||||| || |||||| || |||||||| ||||| || ||||| |||| |
Sbjct 3858044 ACAAAAAAGGAAAGGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACTTCAAAGG 3857985
Query 1720 AGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAATCA 1779
| ||| || || || || ||||| ||| || || |||||| | ||||| | |
Sbjct 3857984 AAGACACCACCACAGTGAGGATTGGCTGTGAAACCAGGCCTAAACACAGTGAACCAGTTA 3857925
Query 1780 GAGACAGA-ATGCTTAACATTCATCTAACACATACCTTGCCTGGTGACTTTGGTTTGGTT 1838
||||| ||| ||||| || || | || ||| |||| | |||||||| |
Sbjct 3857924 AGCACAGATGTGC-CAACATAAGACTTACCAAGACATTGGATGGTAAGTTTGGTTTAATA 3857866
Query 1839 GACAAAAATGAA 1850
||| |||| |||
Sbjct 3857865 GACCAAAAAGAA 3857854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16363522906350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |