Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq312 190 7e-45 seq88 147 7e-32 seq109 89.7 2e-14 >seq312 Length=1426583 Score = 190 bits (210), Expect = 7e-45 Identities = 295/417 (71%), Gaps = 7/417 (2%) Strand=Plus/Minus Query 1368 AAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTTTGTCACGCTATAGCATGTGTTT 1427 ||||||| ||| | | ||||| ||| || ||| | || || || ||| ||||||| Sbjct 1344853 AAATTTTCAGACTAAATGGATGCAATCTAATAAAAATATGCCATGCAATA--ATGTGTTG 1344796 Query 1428 --TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGG 1485 | |||| ||| |||||| |||| ||| || | || || |||||||| || ||||| Sbjct 1344795 CCTCAATAAGCAAATAGGTAAATGAAACACAATTTTATTACAGGGACCAGCCAGCACAGG 1344736 Query 1486 AAAATCTA-TCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATG 1544 ||| || | || |||||| ||| | || ||||||||||| || || || Sbjct 1344735 GAAAACTCCTTATAGCTCAAAAAATATGTGAGTTAGTTGGTAATGTTGGATGCTACAACC 1344676 Query 1545 CAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAG 1604 || ||||||||| ||||| |||||||| || || | |||| | || | || |||| Sbjct 1344675 CAAAAAATGTAAAATTTCCTTTTAATGATTGCTGCAGCATAAATATTATCTAAATAGAAG 1344616 Query 1605 AAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAA 1664 |||| || ||| | || |||||||| || |||||||||||||| || ||||||| | Sbjct 1344615 AAGCAGGAAACCTAGGACAACAAGTAAACCAATTTAAAGCAATAGTGTCAGGACAAAGCA 1344556 Query 1665 TTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGA 1724 | || | | |||||||| ||||| || || || |||||||||||||| || |||| Sbjct 1344555 TAAGGTTAGCCCAAAAAGGAAAAGGTAGCAAATCCATAGAACCAACTCCAGTTATAATGA 1344496 Query 1725 CAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATA 1781 | | |||||| | || || | ||||||| ||| |||||| || | | |||||| Sbjct 1344495 CCAGGAATGAAGACATCACCA--GTGAGAACTGGTTGTGAAATCAGGCTTCAACATA 1344441 >seq88 Length=11899542 Score = 147 bits (162), Expect = 7e-32 Identities = 310/452 (69%), Gaps = 14/452 (3%) Strand=Plus/Plus Query 1360 AACATGTCAAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTTTGTCACGCTATAGC 1419 || || | |||| |||| | || | |||| ||| |||||| |||||| ||||| Sbjct 366568 AATATTTAAAATATTTAAACTGAATGGATACAATCCATATAAAGTATGTCACACTATA-- 366625 Query 1420 ATGTGTTTTAAATAGA--CAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCA 1477 ||||| | | ||| | ||| || |||||||| ||| | || | || |||| | Sbjct 366626 ATGTGCTGTCTATATAAGCAACTAGGAAAAAGAAACACAATA-TTCTACAACAACCAACC 366684 Query 1478 AGTACAGG-AAAATCTATCATTGCTCAAGCC-ATAGCACA----AGCTG-TGGGTAATGT 1530 || ||||| |||| || ||||||||| || | | | | || || | ||||| | Sbjct 366685 AGCACAGGCAAAAGCT-TCATTGCTCCCCCCCAAAAAATATGTGAGTTGGTTGGTAACAT 366743 Query 1531 TGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATT- 1589 | || || ||| ||||||||| ||||||||||||||||| ||| ||| ||||| | Sbjct 366744 AGTCTGCTACAATCCAGCAAATGACAATTTTCCATTTAATGATTGTTGCAACAAAAAATA 366803 Query 1590 TAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTT 1649 | || ||||| |||||||| || || | || ||| || | | |||||||| |||||| Sbjct 366804 TTATCTGGATAGAAGAAGCAGGAAATCTAGGACAATAAATAAGCCAATTTAAGGCAATTA 366863 Query 1650 GTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAA 1709 || || |||| | | | | || || ||||| ||||| || || |||| || | Sbjct 366864 TGTCAGGGCAAAGCACAAAACTAGACCAGAAAGGAAAAGGCAGCAAATCCGTTGAGCCCA 366923 Query 1710 CTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAA 1769 |||| | ||||||| | ||| || | |||| | || ||||||||||||||| | Sbjct 366924 CTCCTATTATTATGATCAGTAACAAAGACATAATTGTAGTAAGAATTGGATGTGAAATCA 366983 Query 1770 GACCTGAACATACACAACCAATAAGAGACAGA 1801 | ||||||||| |||| || | | ||||| Sbjct 366984 GGCCTGAACATGGTGAACCTATTAAACACAGA 367015 >seq109 Length=10228628 Score = 89.7 bits (98), Expect = 2e-14 Identities = 156/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 1554 TAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTA 1613 |||| |||||||||||||| ||| | || || | || || || || |||| | Sbjct 3858163 TAAACTTTCCATTTAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAAGTGGAGC 3858104 Query 1614 ACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTG 1673 | || |||| ||||| | || || |||||||| || || || || | || | | Sbjct 3858103 AGTTATGTCAGCAAGTAGACCAGTTCAAAGCAATAATATCAGGGAAAGCA-TCAGGCTGG 3858045 Query 1674 ATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATG 1733 | ||||||| || ||||| || || ||||||||||||||||||||||| | || | Sbjct 3858044 ACAAAAAAGGAAAGGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACTTCAAAGG 3857985 Query 1734 AAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACA 1779 || | | || | ||||| ||||| |||||| || ||| |||| Sbjct 3857984 AAGACACCACCACAGTGAGGATTGGCTGTGAAACCAGGCCTAAACA 3857939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16920279454200