Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq64 172 2e-39 >seq64 Length=12756018 Score = 172 bits (190), Expect = 2e-39 Identities = 222/302 (74%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1518 AAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAA 1577 ||| ||||| |||| ||| | | || || || ||||| || || |||||||| ||||| Sbjct 8428642 AAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACCAACATGGCAGAG 8428701 Query 1578 GCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCT 1637 || |||||||| || || ||| |||||||||||| |||||||| || |||||||||||| Sbjct 8428702 GCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAACGAGAACTTTCCT 8428761 Query 1638 TTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAG 1697 || ||||| || |||| || ||| | || ||||||||||| || | ||||| ||| Sbjct 8428762 TTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGGATGACATCCAAG 8428821 Query 1698 GTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGC--TGTCCGGGTAGACCAGAAAT 1755 || || ||||| || || || ||| | | ||| | || || || || || |||||| Sbjct 8428822 GTGGTGGAATCGGCCAAGGCCATTCTTG--GGGGCAGCAAAGTGCGTGTGGATCAGAAAG 8428879 Query 1756 GTAAAGGATCTGTTTGTATTGAACC-TACTCCTGTAATTATTACTAGTAATACTGATATG 1814 | ||| |||| || | || || |||||||| || || || || || ||||| ||| Sbjct 8428880 GCAAATCTTCTG-CTGAAGTGGCCCAAACTCCTGTCATCATGACCAGCAACACTGACATG 8428938 Query 1815 TG 1816 || Sbjct 8428939 TG 8428940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16225933644525