Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq312 194 5e-46 seq109 147 7e-32 seq88 141 3e-30 >seq312 Length=1426583 Score = 194 bits (214), Expect = 5e-46 Identities = 256/350 (73%), Gaps = 5/350 (1%) Strand=Plus/Minus Query 1411 ATTAAAGTCTGCCATGCTATAACTTGTGTACTAAACAGACAAGGAGGAAAAAGAAATACA 1470 || ||| | |||||||| |||| ||| || || | ||| ||| ||| |||| ||| Sbjct 1344824 ATAAAAATATGCCATGCAATAATGTGTTGCCTCAATAAGCAAATAGGTAAATGAAACACA 1344765 Query 1471 ATTCTATTTCATGGGCCAGCATCAACAGGAAAAAGTA-TAATTGCTCAACACATTGCAAA 1529 ||| |||| || || ||||| ||||| |||| | | || |||||| | || | Sbjct 1344764 ATTTTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAGCTCAAAAAATATGTGA 1344705 Query 1530 CTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTG 1589 ||||||||||||||||| |||||||| || ||||| || ||||| |||||||| || Sbjct 1344704 GTTAGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAATTTCCTTTTAATGATTG 1344645 Query 1590 -TACAA-ATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAAC 1647 | || ||||| | | || | || ||||||||||||||| | | ||||||||| Sbjct 1344644 CTGCAGCATAAATATT--ATCTAAATAGAAGAAGCAGGAAACCTAGGACAACAAGTAAAC 1344587 Query 1648 CAATTCAAAGCCATATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGC 1707 ||||| ||||| ||| ||||| |||| || || | | ||||||||| ||||| ||| Sbjct 1344586 CAATTTAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAAAAGGAAAAGGTAGC 1344527 Query 1708 AAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAAC 1757 ||| || ||||||||||| || |||||||| | ||||||||||| || Sbjct 1344526 AAATCCATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACATCAC 1344477 Score = 100 bits (110), Expect = 9e-18 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 2393 ACTCTACCAGGATACAAATACCTTGGTCCAGGAAACTCACTAGACCAAGGAGAACCAACT 2452 ||| | |||||| | ||||||||||| ||||||||| | | |||||||||||||||| Sbjct 1343848 ACTTTGCCAGGA-ATAAATACCTTGGCCCAGGAAACACTTTCGACCAAGGAGAACCAAAC 1343790 Query 2453 AATCCATCAGACGCCGCAGCAAAAGAACACGACGAAGCCTA-CGACAAATACATAAAATC 2511 || ||| || || || ||||||||||| | | ||| | | | | || | || Sbjct 1343789 AACCCAAGTGATAAGGCTGCCAAAGAACACGAAGCACACTATCATCTACTGCA-ACAAGG 1343731 Query 2512 TGGAAAAAATCCATACTTCTACTTCTCAGCAGCTGATGAAAAATTCATAAAAGAAACTGA 2571 | || || || |||||||||||| |||||| | ||||| ||| |||| ||||| Sbjct 1343730 CAGTAATAACCCTTACTTCTACTTCAACAAAGCTGAGAATAAATTTATACAAGACACTGA 1343671 Query 2572 ACACGCAAAAGACTACGGAGGTAAAATTGGACATTACTTCTTCAGAGCAAA 2622 || ||| ||||| ||||| || || | | |||||||||||||| Sbjct 1343670 CCAAACAACAGACTGGGGAGGCTGGATCAGAAACAAATTCTTCAGAGCAAA 1343620 >seq109 Length=10228628 Score = 147 bits (162), Expect = 7e-32 Identities = 246/361 (68%), Gaps = 25/361 (7%) Strand=Plus/Minus Query 1442 TAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGAA 1501 |||||| ||| |||||||||||| |||||||| | | || |||||| ||| ||| Sbjct 3858313 TAAACAAGCAATTAGGAAAAAGAAACACAATTCTCCTATAAGGACCAGCAAACACAAGAA 3858254 Query 1502 AAAGTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAG 1561 ||| | || || ||| | | | |||| ||||||||||||||||||||||| ||| Sbjct 3858253 GAAGCTTCATAGCACAAAAAAATTGTGACTTGGTTGGTAATGTTGGTTGCTACAACCCAG 3858194 Query 1562 CCAATGTGAA------------------------CTTTCCATTTAATGACTGTACAAATA 1597 | || || || ||||||||||||||| ||| | | Sbjct 3858193 CTAAAGTAAAAAAAAAAAAAAAAAGTTGAATAAACTTTCCATTTAATGATTGTTGTAGCA 3858134 Query 1598 AAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAG 1657 | ||| | || || || || |||| | | || | | | |||||| |||| ||||||| Sbjct 3858133 ACAACATCATCTGAATAGAGGAAGTGGAGCAGTTATGTCAGCAAGTAGACCAGTTCAAAG 3858074 Query 1658 CCATATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTG 1717 | ||| ||||| || || | || | ||| ||||||| || ||||||||| || | Sbjct 3858073 CAATAATATCAGGGAAAGCA-TCAGGCTGGACAAAAAAGGAAAGGGAAGCAAAACCATAG 3858015 Query 1718 AACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCG 1777 |||||||||| ||||| |||||| |||| ||||||| || | ||| || || || || | Sbjct 3858014 AACCAACTCCAGTAATTATGACTTCAAAGGAAGACACCACCACAGTGAGGATTGGCTGTG 3857955 Query 1778 A 1778 | Sbjct 3857954 A 3857954 >seq88 Length=11899542 Score = 141 bits (156), Expect = 3e-30 Identities = 288/416 (69%), Gaps = 20/416 (5%) Strand=Plus/Plus Query 1413 TAAAGTCTGCCATGCTATAACTTG-TGTACTAAACAGACAAGGAGGAAAAAGAAATACAA 1471 |||||| || || |||||| || ||| ||| | | ||| |||||||||||| |||| Sbjct 366607 TAAAGTATGTCACACTATAATGTGCTGT-CTATATAAGCAACTAGGAAAAAGAAACACAA 366665 Query 1472 T--TCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTC------AACACAT 1523 | |||| || | | || || |||| ||||| | ||||||| || | || Sbjct 366666 TATTCTACAACAAC--CAACCAGCA-CAGGCAAAAGCTTCATTGCTCCCCCCCAAAAAAT 366722 Query 1524 TGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAA 1583 | || |||||||| | | ||||||||| |||| |||| || ||||||||||| Sbjct 366723 ATGTGAGTTGGTTGGTAACATAGTCTGCTACAATCCAGCAAATGACAATTTTCCATTTAA 366782 Query 1584 TGACTG-TACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAAC--CA 1640 ||| || | ||| ||||| | || ||||| |||||||||||||| ||| || | Sbjct 366783 TGATTGTTGCAACAAAAAATATTATCTGGATAGAAGAAGCAGGAAA--TCTAGGACAATA 366840 Query 1641 AGTAAACCAATTCAAAGCCA-TATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTA 1699 | ||| |||||| || || | |||| ||||| |||| | | | | ||||| ||||| | Sbjct 366841 AATAAGCCAATTTAAGGCAATTATG-TCAGGGCAAAGCACAAAACTAGACCAGAAAGGAA 366899 Query 1700 AAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTA 1759 |||| |||||| |||| || |||||| | || |||| | || ||||||||| | Sbjct 366900 AAGGCAGCAAATCCGTTGAGCCCACTCCTATTATTATGATCAGTAACAAAGACATAATTG 366959 Query 1760 AAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGA 1815 ||| ||||| ||||| || || || |||||| |||| || | | ||||| Sbjct 366960 TAGTAAGAATTGGATGTGAAATCAGGCCTGAACATGGTGAACCTATTAAACACAGA 367015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16126741386000