Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq64 352 9e-94 >seq64 Length=12756018 Score = 352 bits (390), Expect = 9e-94 Identities = 563/803 (70%), Gaps = 9/803 (1%) Strand=Plus/Plus Query 984 AGGTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGG 1043 || || ||||| || ||| ||||| ||||| || || || |||||||| |||||| Sbjct 8428330 AGATATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAACAATGG 8428389 Query 1044 ATTCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAG 1103 || |||| ||| | | || | | | ||| || || | |||| | | ||| Sbjct 8428390 ATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGAAGCCAA 8428449 Query 1104 ATCAAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGAC 1163 ||| || || |||||||| || ||| ||| ||| ||||| ||| || Sbjct 8428450 ATCCGAGCGGCCCTGGACAACACCAGGCAGAAACTGATTTGGACTAAGACAGCTAAAGAT 8428509 Query 1164 TACCTGGTGGG--CAGCAACCCG-CCGGAGGACATTACCAAAAATCGGATCTACCAAATC 1220 || ||||| || || | ||| ||||| |||| ||| |||||||||||||||| ||| Sbjct 8428510 TATCTGGTAGGGTCATCGGCCCCTCCGGAAAACATGACCCAAAATCGGATCTACCAGATC 8428569 Query 1221 CTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAA 1280 | || |||| || |||||||| | ||||| | | | | | | || ||| Sbjct 8428570 TTCGACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTTGGATGGTGTAGC 8428629 Query 1281 AAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACC 1340 | | || || || | |||||||||||| | ||||| || || || || || |||||| Sbjct 8428630 CATCAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACC 8428689 Query 1341 AACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAAT 1400 ||||| || || ||||| |||||||| |||||| ||| ||||| || |||||||| || Sbjct 8428690 AACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAAC 8428749 Query 1401 GAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1460 ||||||||||| ||||| || ||| | ||||||||| | |||||||||||||| || | | Sbjct 8428750 GAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGG 8428809 Query 1461 ATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTG 1520 ||||| ||||||| ||||| |||||||||||||| || || ||||| ||||| ||| Sbjct 8428810 ATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGCAAAGTGCGTGTG 8428869 Query 1521 GACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAAC 1580 || || || |||| || || || | | | | ||||| || ||| | ||| |||| Sbjct 8428870 GATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATCATGACCAGCAAC 8428929 Query 1581 ACCAACATGTGCGCCGTGATTGACGG--GAACAGC-ACCACCTTCGAGCATCAGCAGCCG 1637 || |||||||| | ||| || || ||| | ||| | ||||| | |||||| Sbjct 8428930 ACTGACATGTGCACAGTG---GATGGTAGAATTTCGACCCCGGAGGAGCACCTGCAGCCT 8428986 Query 1638 CTGCAGGACCGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAG 1697 || || || || ||||| ||||||| || || || || | | |||||||| || Sbjct 8428987 CTCCAAGATCGCATGTTCAAATTTGAGCTGACACGTGCCCTGAAGCCGGACTTTGGCAAA 8429046 Query 1698 GTCACCAAACAGGAAGTAAAGGACTTTTTCCGGTGGGCTTCCGATCACGTGACTGACGTG 1757 ||||||||||||| || | |||||||||||||||||||| |||||| || || ||| Sbjct 8429047 ATCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGATCACAGGAGGGAAGTG 8429106 Query 1758 GCTCATGAGTTCTACGTCAGAAA 1780 || | || |||| ||||| || Sbjct 8429107 ACTGAGGAATTCTTAGTCAGGAA 8429129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010028540025