Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq64 374 3e-100 >seq64 Length=12756018 Score = 374 bits (414), Expect = 3e-100 Identities = 585/829 (71%), Gaps = 7/829 (1%) Strand=Plus/Plus Query 1038 AGGTACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGG 1097 || || ||||| || ||| ||||| ||||| || || || |||||||| |||||| Sbjct 8428330 AGATATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAACAATGG 8428389 Query 1098 ATCCAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAA 1157 || |||| ||| | | || | | | ||| || || | |||| | | ||| Sbjct 8428390 ATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGAAGCCAA 8428449 Query 1158 ATCAAGGCCGCGCTGGACAATGCCTC-CAAAATCATGAGCCTGACAAAGACGGCTCCGGA 1216 ||| || || |||||||| || || || | ||| ||| ||||| ||| || Sbjct 8428450 ATCCGAGCGGCCCTGGACAACACCAGGCAGAAAC-TGATTTGGACTAAGACAGCTAAAGA 8428508 Query 1217 CTACCTGGT-GGGCCA--GAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAAT 1273 || ||||| ||| || | ||| ||||| |||| || || || ||||||| || Sbjct 8428509 TTATCTGGTAGGGTCATCGGCCCCTCCGGAAAACATGACCCAAAATCGGATCTACCAGAT 8428568 Query 1274 CCTCGAGATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCA 1333 | |||| ||||| || |||||||| | ||||| | | | | | | || ||| Sbjct 8428569 CTTCGACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTTGGATGGTGTAG 8428628 Query 1334 AAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAAC 1393 | | || || || | |||||||||||| | ||||| || || || || || ||||| Sbjct 8428629 CCATCAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAAC 8428688 Query 1394 CAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAA 1453 |||||| || || ||||| |||||||| |||||| ||| ||||| || |||||||| || Sbjct 8428689 CAACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAA 8428748 Query 1454 TGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAA 1513 ||||||||||| ||||| || ||| | ||||||||| | |||||||||||||| || | Sbjct 8428749 CGAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAG 8428808 Query 1514 GATGACGGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGT 1573 |||||| ||||||| || || ||||||||||| || || || ||||| ||||| || Sbjct 8428809 GATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGCAAAGTGCGTGT 8428868 Query 1574 GGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAA 1633 ||| || || |||| || || || | | | || |||||| || ||| | ||| ||| Sbjct 8428869 GGATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATCATGACCAGCAA 8428928 Query 1634 CACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACT 1693 ||| |||||||| | || | ||| |||||| | ||||||| || || || Sbjct 8428929 CACTGACATGTGCACAGTGGATGGTAGAATTTCGACCCCGGAGGAGCACCTGCAGCCTCT 8428988 Query 1694 CCAGGACCGGATGTTCAAGTTCGAGCTCAC-CAAGCGCCTGGAGCACGACTTTGGCAAGG 1752 ||| || || |||||||| || ||||| || | || |||| ||| ||||||||||| Sbjct 8428989 CCAAGATCGCATGTTCAAATTTGAGCTGACACGTGC-CCTGAAGCCGGACTTTGGCAAAA 8429047 Query 1753 TCACCAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCGTCAGATCACGTGACCGAGGTGA 1812 ||||||| ||||| |||| |||||||||||||||||| || |||||| || || |||| Sbjct 8429048 TCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGATCACAGGAGGGAAGTGA 8429107 Query 1813 CTCACGAGTTTTACGTCAGAAAGGGTGGAGCTAGAAAGAGGCCCGCCCC 1861 || | || || | ||||| || | || | || ||||| |||||||| Sbjct 8429108 CTGAGGAATTCTTAGTCAGGAAAGTGGGGTCCAGGAAGAGACCCGCCCC 8429156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15141218301300