Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq64 338 2e-89 >seq64 Length=12756018 Score = 338 bits (374), Expect = 2e-89 Identities = 576/830 (69%), Gaps = 15/830 (2%) Strand=Plus/Plus Query 1004 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1063 || ||||| || ||| ||||| ||||| |||||| ||||| || || || ||||| Sbjct 8428333 TATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAACAATGGATG 8428392 Query 1064 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCTTCCAACTCGCGGTCCCAGATC 1123 |||| ||| | | || | | | ||| || || | |||| | | ||| ||| Sbjct 8428393 GAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGAAGCCAAATC 8428452 Query 1124 AAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1183 || || |||||||| || | ||| || ||| || | || || || Sbjct 8428453 CGAGCGGCCCTGGACAACACCAGGCAGAAACTGATTTGGACTAAGACAGCTAAAGATTAT 8428512 Query 1184 CTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAACC---AACCGCATCTACCGCATCCTG 1240 |||||||| | | | || |||| | | ||| || || ||||||| ||| | Sbjct 8428513 CTGGTAGGGTCATCGGCCCCTCCGGAAAACATGACCCAAAATCGGATCTACCAGATCTTC 8428572 Query 1241 GAGCTGAACGGCTACGAACCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGC---CCAG 1297 || |||| |||||||| || ||||| ||| | | | | || ||| ||| Sbjct 8428573 GACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTTGGATGGTGTAGCCAT 8428632 Query 1298 AAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACC 1357 || || || || || |||||||||||| ||||||| || || ||||| || || ||| Sbjct 8428633 CAA---TTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACC 8428689 Query 1358 AACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAAT 1417 ||||| || || ||||| |||||||| |||||| ||| ||||| ||||||||||| || Sbjct 8428690 AACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAAC 8428749 Query 1418 GAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAG 1477 ||||||||||| |||||||| ||| | ||||||||| | |||||||||||||| || | | Sbjct 8428750 GAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGG 8428809 Query 1478 ATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTG 1537 ||||| ||||||| ||||| || |||||||||||||| || |||||||| ||||| ||| Sbjct 8428810 ATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGCAAAGTGCGTGTG 8428869 Query 1538 GACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAAC 1597 || || || |||| || || || | | | || || || || ||| | ||| |||| Sbjct 8428870 GATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATCATGACCAGCAAC 8428929 Query 1598 ACCAACATGTGCGCCGTGATTGACGG--GAACAGC-ACCACCTTCGAGCACCAGCAGCCG 1654 || |||||||| | ||| || || ||| | ||| | ||||||| |||||| Sbjct 8428930 ACTGACATGTGCACAGTG---GATGGTAGAATTTCGACCCCGGAGGAGCACCTGCAGCCT 8428986 Query 1655 TTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAG 1714 | || || || |||||||||||||| || || || ||| ||| ||||||||||| Sbjct 8428987 CTCCAAGATCGCATGTTCAAATTTGAGCTGACACGTGCCCTGAAGCCGGACTTTGGCAAA 8429046 Query 1715 GTGACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCGCAGGATCACGTGACCGAGGTG 1774 | || || ||||| |||| ||| || ||||| ||||| |||||| || || ||| Sbjct 8429047 ATCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGATCACAGGAGGGAAGTG 8429106 Query 1775 GCGCATGAGTTCTACGTCAGAAAGGGTGGAGCCAACAAAAGACCCGCCCC 1824 | | || |||| ||||| || | || ||| || ||||||||||| Sbjct 8429107 ACTGAGGAATTCTTAGTCAGGAAAGTGGGGTCCAGGAAGAGACCCGCCCC 8429156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14984430537825