Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq64 271 2e-69 >seq64 Length=12756018 Score = 271 bits (300), Expect = 2e-69 Identities = 575/849 (68%), Gaps = 23/849 (3%) Strand=Plus/Plus Query 898 AGCAAACGCTACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAG 957 ||| || | || ||||| || || | ||||||||||||||||| || ||| | || || Sbjct 8428324 AGCCAAAGATATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAA 8428383 Query 958 GAATGGCTGCTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAGGCCTCGAGCAACTCGGCG 1017 ||||| || |||| || |||| || | ||||||| | || | ||||| | Sbjct 8428384 CAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGA 8428443 Query 1018 CGTCAGATCAAGACGGCCCTGCAAGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCG 1077 | || ||| |||||||| | | ||| ||| | || || ||| ||||| || Sbjct 8428444 AGCCAAATCCGAGCGGCCCTGGACAACACCAGGCAGAAACTGATTTGGACTAAGACAGCT 8428503 Query 1078 GAGGACTACCTCGTCGG---AAAGGATCCCGTCTCGGACGACGACATCCGTCAGAACCGC 1134 | || || || || || | || ||| || |||| || | || | || || Sbjct 8428504 AAAGATTATCTGGTAGGGTCATCGG--CCCCTC-CGGAAAACATGACCC---AAAATCGG 8428557 Query 1135 ATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTC 1194 |||||| |||| | || |||| |||||| ||| |||| || || || |||| Sbjct 8428558 ATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTT 8428617 Query 1195 GGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACC 1254 || ||||| | ||| || || |||||||| | ||| |||| || | |||||| Sbjct 8428618 GGATGGTGTAGCCATCAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACC 8428677 Query 1255 ACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTT 1314 || || || |||||||| || ||||| |||||||| || ||||| |||||| || || Sbjct 8428678 ACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTC 8428737 Query 1315 AACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGG 1374 |||||||| |||||||||||||| ||||| |||||| | || || ||||||||||||||| Sbjct 8428738 AACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGG 8428797 Query 1375 GAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCT 1434 ||||| || | ||||| |||| ||||||||| | |||||||| ||||| || || Sbjct 8428798 GAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGC 8428857 Query 1435 CGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATT 1494 ||| | ||||| || ||| ||||| |||| | | | | | || || ||||| Sbjct 8428858 AAAGTGCGTGTGGATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATC 8428917 Query 1495 ATTACCAGTAACACCAACATGTGTTATGTCATCGACGG--GAA-CACGACCACGTTCGAG 1551 || ||||| ||||| ||||||| | | || || ||| ||||| || ||| Sbjct 8428918 ATGACCAGCAACACTGACATGTGCACAG---TGGATGGTAGAATTTCGACCCCGGAGGAG 8428974 Query 1552 CATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACTCGGTTGCCTGA- 1610 || |||||| | | || | ||||| || | || |||||| | || ||||| Sbjct 8428975 CACCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGA---GCTGACAC-GTGCCCTGAA 8429030 Query 1611 ---TGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTTCAGGTGGTCTCAGGA 1667 |||||||| || | |||||||||||||| | | || ||| ||||| || || Sbjct 8429031 GCCGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGA 8429090 Query 1668 TCACCTGACCCCTGTGATCCCAGAATTCCTAGTGCGGAAGGCGGAGTCTCGCAAAAGACC 1727 |||| || |||| |||||| |||| |||| | || ||| | || ||||| Sbjct 8429091 TCACAGGAGGGAAGTGACTGAGGAATTCTTAGTCAGGAAAGTGGGGTCCAGGAAGAGACC 8429150 Query 1728 CGCCCCTTC 1736 ||||||||| Sbjct 8429151 CGCCCCTTC 8429159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14907636531225