Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq64 293 7e-76 >seq64 Length=12756018 Score = 293 bits (324), Expect = 7e-76 Identities = 786/1193 (66%), Gaps = 40/1193 (3%) Strand=Plus/Plus Query 592 CAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTCGTGGA 651 |||||||||||| ||||||||||| ||| | || | ||| ||||| |||| | | || Sbjct 8427903 CAAATTCTTTGTTCAGTTTGAAAAAGGAACAGATTTTTTCCATCTTCACATTTTGATTGA 8427962 Query 652 GACCTCCGGCATCTCTTCTATGGTCCTTGGCCGCTACGTGAGTCAGATTCGCGCCCAGCT 711 || || || ||||| |||||||| || ||| ||||||| | | | Sbjct 8427963 AACTACCAATATGAAGAGCATGGTTCTTGGCCGTTATCTGAATCAGATTAAAAGCAAAGT 8428022 Query 712 GGTGAAGGTGGTGTTCCAGAACATTGAGCCGCGGATTAACGACTGGG--TCGCCATCACC 769 |||| |||||| |||| || || || ||| | |||| | | || |||| Sbjct 8428023 CGTGACTCTGGTGTATGAGAATATGGAACCCGCCATT--CCACTGTGGATGGCTGCCACC 8428080 Query 770 AAGGTA----AAGAAGGGCGGAGCCAATAAGGTGGTGGATTCTGGGTATATTCCCGCCTA 825 ||| | ||| ||| |||||||||||||| || || | ||||| |||||||| Sbjct 8428081 AAGACATCCCAAGT-GGGAGGAGCCAATAAGGTTCTGAATCAGAGTTATATCCCCGCCTA 8428139 Query 826 CCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAACCTCGAAGAGTATAA 885 ||| || ||| ||||||||| | |||||||||||||| ||| | ||||||| || Sbjct 8428140 CCTTCTAGGAAAGAGCCAACCAGAATTGCAGTGGGCGTGGACCAACATTAAAGAGTACAA 8428199 Query 886 ATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGCTCGTCGCTCAGT------TTCAGCT 939 | | || || ||||| ||| ||||| |||| || | || ||||| | Sbjct 8428200 ACGCGTGGCTCTGAATCTCTCGGAACGCAAGAGGCTGGTGGAGGAGCACCGGATTCAGTT 8428259 Query 940 TGAGTCCTCGCAG-CGCTCGCAAGAG-GCATCTTCCCAGAGGGACGTTTCGGCTGACCCG 997 | ||| || | ||| |||| | ||| ||| | | ||| | | ||| Sbjct 8428260 TAGGTCA----AGTCTCTCCCAAGCGAGCAG-TTCT------GGCATTTG---TAATCCG 8428305 Query 998 GTCATCAAGAGCAAGACTTCCCAGAAATACATGGCGCTGGTAAGCTGGCTGGTGGAACAT 1057 || |||| | |||| ||| | ||| |||| || || | ||||| ||||| | Sbjct 8428306 GTGATCAGAACTAAGAGGAGCCAAAGATATATGGATCTTGTCAAATGGCTCGTGGAGAAG 8428365 Query 1058 GGCATCACTTCCGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAAC 1117 ||||| || || || || || ||||| |||| | | || | |||| ||| || Sbjct 8428366 GGCATTACCTCAGAAAAACAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAAT 8428425 Query 1118 TCCACGGGAAACTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGC--GTCAAAAATTA 1175 | || || ||| | | ||||| || ||| || || |||||| | | || ||| | Sbjct 8428426 GCAACAGGCAACACCAGAAGCCAAATCCGAGCGGCCCTGGACAACACCAGGCAGAAACT- 8428484 Query 1176 TGAGTCTGACCAAATCTGCCTCAGACTATCTCGT-GGGACA--GACTGTTCCAGAGGACA 1232 || | ||| || | || ||| ||||| || ||| || | | ||| || ||| Sbjct 8428485 -GATTTGGACTAAGACAGCTAAAGATTATCTGGTAGGGTCATCGGCCCCTCCGGAAAACA 8428543 Query 1233 TTTCTGAAAACAGAATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGG 1292 | | |||| | |||| ||||| || || | || |||||||| || ||||| | Sbjct 8428544 TGACCCAAAATCGGATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTG 8428603 Query 1293 GCTCTGTTCTCTACGGCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGT 1352 || | || || ||||| | | |||||||| | |||||| ||||| ||| Sbjct 8428604 GCAGCATACTGGTTGGATGGTGTAGCCATCAATTTGGAAAACGAAACACCATCTGGTTGT 8428663 Query 1353 ATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCT 1412 ||| ||||||||||| ||||| |||||||| || || ||||| | ||| | |||||| Sbjct 8428664 TTGGCCCCGCGACCACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCG 8428723 Query 1413 TTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAA 1472 ||||||||||| |||||||| || |||||||| || || | Sbjct 8428724 CCTATGGCTGTGTCAACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGA 8428783 Query 1473 TGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCA 1532 || | |||||||||||||| || | |||||| ||||||||||||| | |||||||||| Sbjct 8428784 TGATTATCTGGTGGGAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCA 8428843 Query 1533 -TCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGAC 1591 ||||||||| | | ||| || |||||||| ||| | ||||| |||| |||| | | Sbjct 8428844 TTCTTGGGGGCAGC-AAAGTGCGTGTGGATCAGAAAGGCAAATCTTCTGCTGAAGTGGCC 8428902 Query 1592 TCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCC 1651 || || || || || ||| ||| ||| ||||||| |||| | | | | || Sbjct 8428903 CAAACTCCTGTCATCATGACCAGCAACACTGACATGTGCACAGTGGATGGTAGAATTTCG 8428962 Query 1652 ACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGCGG 1711 || | || |||| |||||| || |||| |||||||||| |||||| || | || Sbjct 8428963 ACCCCGGAGGAGCACCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGAGCTGACACGT 8429022 Query 1712 CGGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTT 1764 || ||| || |||||||| || ||||| ||||| |||| ||||||||| Sbjct 8429023 GCCCTGAAGCCGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTT 8429075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14904436780950