Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_005889.1
Length=4693
Score E
Sequences producing significant alignments: (Bits) Value
seq64 293 7e-76
>seq64
Length=12756018
Score = 293 bits (324), Expect = 7e-76
Identities = 786/1193 (66%), Gaps = 40/1193 (3%)
Strand=Plus/Plus
Query 592 CAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTCGTGGA 651
|||||||||||| ||||||||||| ||| | || | ||| ||||| |||| | | ||
Sbjct 8427903 CAAATTCTTTGTTCAGTTTGAAAAAGGAACAGATTTTTTCCATCTTCACATTTTGATTGA 8427962
Query 652 GACCTCCGGCATCTCTTCTATGGTCCTTGGCCGCTACGTGAGTCAGATTCGCGCCCAGCT 711
|| || || ||||| |||||||| || ||| ||||||| | | |
Sbjct 8427963 AACTACCAATATGAAGAGCATGGTTCTTGGCCGTTATCTGAATCAGATTAAAAGCAAAGT 8428022
Query 712 GGTGAAGGTGGTGTTCCAGAACATTGAGCCGCGGATTAACGACTGGG--TCGCCATCACC 769
|||| |||||| |||| || || || ||| | |||| | | || ||||
Sbjct 8428023 CGTGACTCTGGTGTATGAGAATATGGAACCCGCCATT--CCACTGTGGATGGCTGCCACC 8428080
Query 770 AAGGTA----AAGAAGGGCGGAGCCAATAAGGTGGTGGATTCTGGGTATATTCCCGCCTA 825
||| | ||| ||| |||||||||||||| || || | ||||| ||||||||
Sbjct 8428081 AAGACATCCCAAGT-GGGAGGAGCCAATAAGGTTCTGAATCAGAGTTATATCCCCGCCTA 8428139
Query 826 CCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAACCTCGAAGAGTATAA 885
||| || ||| ||||||||| | |||||||||||||| ||| | ||||||| ||
Sbjct 8428140 CCTTCTAGGAAAGAGCCAACCAGAATTGCAGTGGGCGTGGACCAACATTAAAGAGTACAA 8428199
Query 886 ATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGCTCGTCGCTCAGT------TTCAGCT 939
| | || || ||||| ||| ||||| |||| || | || ||||| |
Sbjct 8428200 ACGCGTGGCTCTGAATCTCTCGGAACGCAAGAGGCTGGTGGAGGAGCACCGGATTCAGTT 8428259
Query 940 TGAGTCCTCGCAG-CGCTCGCAAGAG-GCATCTTCCCAGAGGGACGTTTCGGCTGACCCG 997
| ||| || | ||| |||| | ||| ||| | | ||| | | |||
Sbjct 8428260 TAGGTCA----AGTCTCTCCCAAGCGAGCAG-TTCT------GGCATTTG---TAATCCG 8428305
Query 998 GTCATCAAGAGCAAGACTTCCCAGAAATACATGGCGCTGGTAAGCTGGCTGGTGGAACAT 1057
|| |||| | |||| ||| | ||| |||| || || | ||||| ||||| |
Sbjct 8428306 GTGATCAGAACTAAGAGGAGCCAAAGATATATGGATCTTGTCAAATGGCTCGTGGAGAAG 8428365
Query 1058 GGCATCACTTCCGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAAC 1117
||||| || || || || || ||||| |||| | | || | |||| ||| ||
Sbjct 8428366 GGCATTACCTCAGAAAAACAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAAT 8428425
Query 1118 TCCACGGGAAACTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGC--GTCAAAAATTA 1175
| || || ||| | | ||||| || ||| || || |||||| | | || ||| |
Sbjct 8428426 GCAACAGGCAACACCAGAAGCCAAATCCGAGCGGCCCTGGACAACACCAGGCAGAAACT- 8428484
Query 1176 TGAGTCTGACCAAATCTGCCTCAGACTATCTCGT-GGGACA--GACTGTTCCAGAGGACA 1232
|| | ||| || | || ||| ||||| || ||| || | | ||| || |||
Sbjct 8428485 -GATTTGGACTAAGACAGCTAAAGATTATCTGGTAGGGTCATCGGCCCCTCCGGAAAACA 8428543
Query 1233 TTTCTGAAAACAGAATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGG 1292
| | |||| | |||| ||||| || || | || |||||||| || ||||| |
Sbjct 8428544 TGACCCAAAATCGGATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTG 8428603
Query 1293 GCTCTGTTCTCTACGGCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGT 1352
|| | || || ||||| | | |||||||| | |||||| ||||| |||
Sbjct 8428604 GCAGCATACTGGTTGGATGGTGTAGCCATCAATTTGGAAAACGAAACACCATCTGGTTGT 8428663
Query 1353 ATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCT 1412
||| ||||||||||| ||||| |||||||| || || ||||| | ||| | ||||||
Sbjct 8428664 TTGGCCCCGCGACCACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCG 8428723
Query 1413 TTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAA 1472
||||||||||| |||||||| || |||||||| || || |
Sbjct 8428724 CCTATGGCTGTGTCAACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGA 8428783
Query 1473 TGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCA 1532
|| | |||||||||||||| || | |||||| ||||||||||||| | ||||||||||
Sbjct 8428784 TGATTATCTGGTGGGAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCA 8428843
Query 1533 -TCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGAC 1591
||||||||| | | ||| || |||||||| ||| | ||||| |||| |||| | |
Sbjct 8428844 TTCTTGGGGGCAGC-AAAGTGCGTGTGGATCAGAAAGGCAAATCTTCTGCTGAAGTGGCC 8428902
Query 1592 TCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCC 1651
|| || || || || ||| ||| ||| ||||||| |||| | | | | ||
Sbjct 8428903 CAAACTCCTGTCATCATGACCAGCAACACTGACATGTGCACAGTGGATGGTAGAATTTCG 8428962
Query 1652 ACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGCGG 1711
|| | || |||| |||||| || |||| |||||||||| |||||| || | ||
Sbjct 8428963 ACCCCGGAGGAGCACCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGAGCTGACACGT 8429022
Query 1712 CGGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTT 1764
|| ||| || |||||||| || ||||| ||||| |||| |||||||||
Sbjct 8429023 GCCCTGAAGCCGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTT 8429075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14904436780950
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