Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq64 188 2e-44 >seq64 Length=12756018 Score = 188 bits (208), Expect = 2e-44 Identities = 433/636 (68%), Gaps = 26/636 (4%) Strand=Plus/Plus Query 1208 AGAGCAGC-AAAGAACTATAGCAATCTGGTTGATTGGCTCATTGAGATGGGTATCACCTC 1266 |||| ||| ||||| ||| | |||| || | |||||| | |||| ||| || ||||| Sbjct 8428319 AGAGGAGCCAAAGATATATGG--ATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTC 8428376 Query 1267 TGAAAAACAGTGGCTAACTGAAAATAAAGAGAGCTACCGGAGCTTTCAGGCTACATCTTC 1326 |||||||| ||| | ||| | |||| | || ||||||| | || ||| Sbjct 8428377 AGAAAAACAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGC-- 8428434 Query 1327 AAACAACAGA---CAAGTAAAAGCAGCACTTGAAAATGCCCGAGCAGAAA-TGCTACTAA 1382 |||| |||| ||| | ||| || || || || || | ||||||| || | | Sbjct 8428435 -AACACCAGAAGCCAAATCCGAGCGGCCCTGGACAACACCAG-GCAGAAACTGATTTGGA 8428492 Query 1383 CAAAAACTGCCACAGACTATTTGATTGGAAAA--GACCCAGTTCTGGA---CATTACTAA 1437 | || || || | ||| ||| || | || | | ||| || ||| ||| || | Sbjct 8428493 CTAAGACAGCTAAAGATTATCTGGTAGGGTCATCGGCCCC--TCCGGAAAACATGACCCA 8428550 Query 1438 AAATCGGATCTATCAAATTCTGAAGTTGAATAACTATAACCCTCAATATGTAGGGAGCGT 1497 |||||||||||| || || | | ||||| ||| | || | || | || ||| | Sbjct 8428551 AAATCGGATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTGGCAGCAT 8428610 Query 1498 CCTATGCGGATGGGTGAAAAGAG-AATTCAACAAAAGAAATGCCATATGGCTCTACGGAC 1556 || |||||| || | | |||| ||| |||| |||| ||| | | || | Sbjct 8428611 ACTGGTTGGATGG-TGTAGCCATCAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCC 8428669 Query 1557 CTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATG 1616 | |||||||| ||||| |||||||| || ||||| |||||||| || || ||| ||||| Sbjct 8428670 CCGCGACCACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATG 8428729 Query 1617 GCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTA 1676 ||||||| |||||||| || |||||||| || || ||||||||| |||| || ||| ||| Sbjct 8428730 GCTGTGTCAACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTA 8428789 Query 1677 TATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgg 1736 | ||||||||||| || | ||||| || || |||||||| || || || || || | Sbjct 8428790 TCTGGTGGGAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTG 8428849 Query 1737 gggggTCTGC--TGTACGAGTTGATCAAAAGTGTAAGGGGTCTGTTTGTATTGAACC-TA 1793 |||| | || || || || ||||| || | || |||| || | || || | Sbjct 8428850 GGGG--CAGCAAAGTGCGTGTGGATCAGAAAGGCAAATCTTCTG-CTGAAGTGGCCCAAA 8428906 Query 1794 CTCCTGTAATAATTACCAGTAATACTGATATGTGCA 1829 ||||||| || || ||||| || ||||| ||||||| Sbjct 8428907 CTCCTGTCATCATGACCAGCAACACTGACATGTGCA 8428942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309127151675