Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq64 116 1e-22 >seq64 Length=12756018 Score = 116 bits (128), Expect = 1e-22 Identities = 217/311 (70%), Gaps = 12/311 (4%) Strand=Plus/Plus Query 1275 TTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATC 1334 ||||| || |||||||||||||| ||| ||| || || || || || ||||||| ||| Sbjct 8428636 TTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACCAACATG 8428695 Query 1335 GCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAAC 1394 || | || ||||| || || || | || |||| || ||||| || || ||| Sbjct 8428696 GCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAACGAGAAC 8428755 Query 1395 TTTCCCTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACA 1454 ||||| ||| | |||| | | || || |||||||||||||||| || | ||||||| Sbjct 8428756 TTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGGATGACA 8428815 Query 1455 AACAAAATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGC--TGTACCTGTAGACA 1512 ||| ||||||| |||| || || || ||||| | || || | ||| || Sbjct 8428816 TCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGG--CAGCAAAGTGCGTGTGGATC 8428873 Query 1513 TCAAAGGCAAA---CCCGCTGAAATGTGTCCTCAAACACCCTGT-ATTATTACTAGCAAT 1568 ||||||||| | |||||| ||| || ||||| ||||| || || || ||||| Sbjct 8428874 AGAAAGGCAAATCTTCTGCTGAA--GTGGCC-CAAAC-TCCTGTCATCATGACCAGCAAC 8428929 Query 1569 ACTAACATGTG 1579 ||| ||||||| Sbjct 8428930 ACTGACATGTG 8428940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14069301959175