Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq64 318 2e-83 >seq64 Length=12756018 Score = 318 bits (352), Expect = 2e-83 Identities = 794/1190 (67%), Gaps = 32/1190 (3%) Strand=Plus/Plus Query 582 CCAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTTGTGG 641 ||||||||||||| ||||||||||| ||| | || | ||| ||||| |||| | | | Sbjct 8427902 CCAAATTCTTTGTTCAGTTTGAAAAAGGAACAGATTTTTTCCATCTTCACATTTTGATTG 8427961 Query 642 AGACCTCCGGCATCTCTTCCATGGTCCTCGGCCGCTACGTGAGTCAGATTCGCGCCCAGC 701 | || || || |||||| || ||||| || ||| ||||||| | | Sbjct 8427962 AAACTACCAATATGAAGAGCATGGTTCTTGGCCGTTATCTGAATCAGATTAAAAGCAAAG 8428021 Query 702 TGGTGAAAGTGGTCTTCCAGGGAATTGAACCCCAGAT-CAACGACTGGGTCGCCATCACC 760 | |||| |||| | || || |||||| || | || ||| | || |||| Sbjct 8428022 TCGTGACTCTGGTGTATGAGAATATGGAACCCGCCATTCCACTG-TGGATGGCTGCCACC 8428080 Query 761 AAGGTA----AAGAAGGGCGGAGCCAATAAGGTGGTGGATTCTGGGTATATTCCCGCCTA 816 ||| | ||| ||| |||||||||||||| || || | ||||| |||||||| Sbjct 8428081 AAGACATCCCAAGT-GGGAGGAGCCAATAAGGTTCTGAATCAGAGTTATATCCCCGCCTA 8428139 Query 817 CCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAACCTGGACGAGTATAA 876 ||| || ||| |||||| || | |||||||||||||| ||| | | ||||| || Sbjct 8428140 CCTTCTAGGAAAGAGCCAACCAGAATTGCAGTGGGCGTGGACCAACATTAAAGAGTACAA 8428199 Query 877 ATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAGTTTCTGGCAGAATC 936 | | || |||||||| ||| ||||| |||| || | | || | | || Sbjct 8428200 ACGCGTGGCTCTGAATCTCTCGGAACGCAAGAGGCTGGTGGAGGAGCACCGG-----ATT 8428254 Query 937 CTCGCAGCGCTCGCAGGAGGCGGCTTCGCAGCGTG-AGTTCTCGGC-----TGACCCGGT 990 | | | || || | || | |||| | |||||| ||| | | ||||| Sbjct 8428255 CA-GTTTAGGTCA----AGTCT-CTCCCAAGCGAGCAGTTCT-GGCATTTGTAATCCGGT 8428307 Query 991 CATCAAAAGCAAGACTTCCCAGAAATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGG 1050 |||| || |||| ||| | ||| |||| || ||||| |||||||||||| | || Sbjct 8428308 GATCAGAACTAAGAGGAGCCAAAGATATATGGATCTTGTCAAATGGCTCGTGGAGAAGGG 8428367 Query 1051 CATCACTTCCGAGAAGCAGTGGATCCAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTC 1110 ||| || || || || || ||||| ||||| | | || | ||| ||| || | Sbjct 8428368 CATTACCTCAGAAAAACAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGC 8428427 Query 1111 CACCGGCAACTCTCGGAGCCAGATCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAG 1170 || |||||| | | ||||| ||| || || || |||||| | | | | ||| Sbjct 8428428 AACAGGCAACACCAGAAGCCAAATCCGAGCGGCCCTGGACAACACCAGGCAGAAACTGAT 8428487 Query 1171 TCTGACAAAAAGCGCGGTGGACTACCTCGTGGGGAGCTCCGT---TCCCGAGGACATTTC 1227 | ||| || | || || || || || ||| || | ||| || |||| | Sbjct 8428488 TTGGACTAAGACAGCTAAAGATTATCTGGTAGGGTCATCGGCCCCTCCGGAAAACATGAC 8428547 Query 1228 AAAAAACAGAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGCCTACGCGGGATC 1287 |||| | |||| || || || || |||||||||||||| || ||||| || Sbjct 8428548 CCAAAATCGGATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTGGCAG 8428607 Query 1288 CATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAA-CACCGTCTGGCTCTACG 1346 ||| || || |||||| ||| || | || | ||| |||| ||||| | | | Sbjct 8428608 CATACTGGTTGGATGGTGT-AGCCATCAATTTGGAAAACGAAACACCATCTGGTTGTTTG 8428666 Query 1347 GACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTT 1406 | ||||| || || || || |||||||| || |||||||| |||||| | |||||| | Sbjct 8428667 GCCCCGCGACCACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCT 8428726 Query 1407 ACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGC 1466 | ||||| || |||||||| || || |||||||| || |||||||| | ||||| ||| Sbjct 8428727 ATGGCTGTGTCAACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGA 8428786 Query 1467 TCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCC 1526 | || ||||||||||| || | |||||| ||||||||| ||||| ||||||||||| | Sbjct 8428787 TTATCTGGTGGGAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTC 8428846 Query 1527 TGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTCTGTTCAAATTGATTCTA 1586 | |||||| || ||||| || ||||||||| | ||||| |||| | || | | | Sbjct 8428847 TTGGGGGCAGCAAAGTGCGTGTGGATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAA 8428906 Query 1587 CCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTGGATGGGAATTCCACGA 1646 | |||||||| | || ||| || ||||||| |||| | | | | ||| || Sbjct 8428907 CTCCTGTCATCATGACCAGCAACACTGACATGTGCACAGTGGATGGTAGAATTTCGACCC 8428966 Query 1647 CCTTTGAACACCAGCAGCCGCTGGAGGACCGCATGTTCAAATTTGAACTGACTAAGCG-G 1705 | || |||| |||||| || | || ||||||||||||||||| ||||| | | | Sbjct 8428967 CGGAGGAGCACCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGAGCTGAC-ACGTGCC 8429025 Query 1706 CTCCCGCCAGATTTTGGCAAGATTACTAAGCAGGAAGTCAAGGACTTTTT 1755 || ||| || |||||||| || || || ||||| |||| |||||||| Sbjct 8429026 CTGAAGCCGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTT 8429075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14741249516925