Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq64 367 4e-98 >seq64 Length=12756018 Score = 367 bits (406), Expect = 4e-98 Identities = 729/1069 (68%), Gaps = 28/1069 (3%) Strand=Plus/Plus Query 766 AACAAGGTGGTGGACGAGTGCTACATCCCCAACTACCTCCTGCCCAAGACCCAGCCCGAG 825 || ||||| || | || | || |||||| |||||| || |||| ||| || || Sbjct 8428105 AATAAGGTTCTGAATCAGAGTTATATCCCCGCCTACCTTCTAGGAAAGAGCCAACCAGAA 8428164 Query 826 CTGCAGTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCGTGTTTGAACCTGGCCGAA 885 |||||||||||||||| ||||| | ||||| | | ||| | | |||| || | ||| Sbjct 8428165 TTGCAGTGGGCGTGGACCAACATTAAAGAGTACAAACGCGTGGCTCTGAATCTCTCGGAA 8428224 Query 886 CGCAAACGGCTCGTGGCGCAGCACCTGACCCACGTCAG--CCAGACGCAGGAGCAGAACA 943 ||||| |||| |||| | |||||| || || | || | || | | || | | Sbjct 8428225 CGCAAGAGGCTGGTGGAGGAGCACCGGATTCAGTTTAGGTCAAGTCTCTCC--CA-AGCG 8428281 Query 944 AGGAGAATCTGAACCCCAATTCTGACGCGCCCGTGATCAGGTCAAAAACCTCCGCGCGCT 1003 || || |||| || || | | || |||||||| | || | | | | Sbjct 8428282 AGCAGT-TCTGG----CATTTGTAATCCG---GTGATCAGAACTAAGAGGAGCCAAAGAT 8428333 Query 1004 ACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCC 1063 | ||||| || ||| ||||| ||||| |||||| ||||| || || || ||||| Sbjct 8428334 ATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAACAATGGATGG 8428393 Query 1064 AGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATCA 1123 |||| ||| | | || | | | ||| || || | |||| | | ||| ||| Sbjct 8428394 AGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGAAGCCAAATCC 8428453 Query 1124 AGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTACC 1183 || || |||||||| || | ||| || ||| || | || || || | Sbjct 8428454 GAGCGGCCCTGGACAACACCAGGCAGAAACTGATTTGGACTAAGACAGCTAAAGATTATC 8428513 Query 1184 TGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACC---AACCGCATCTACCGCATCCTGG 1240 |||| ||| | ||| || |||| | | ||| || || ||||||| ||| | | Sbjct 8428514 TGGTAGGGTCATCGGCCCCTCCGGAAAACATGACCCAAAATCGGATCTACCAGATCTTCG 8428573 Query 1241 AGCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGC---CCAGA 1297 | |||| || |||||||| ||||| ||| | | | | || ||| ||| Sbjct 8428574 ACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTTGGATGGTGTAGCCATC 8428633 Query 1298 AAAAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCA 1357 || || || || || |||||||||||| ||||||| ||||| ||||| || || |||| Sbjct 8428634 AA---TTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACCA 8428690 Query 1358 ACATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATG 1417 |||| || || ||||| |||||||| |||||| ||| ||||| ||||||||||| || | Sbjct 8428691 ACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAACG 8428750 Query 1418 AGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGA 1477 |||||||||| ||||| || ||| | ||||||||| | |||||||||||||| || | || Sbjct 8428751 AGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGGA 8428810 Query 1478 TGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGG 1537 |||| ||||||| ||||| || |||||||||||||| || |||||||| ||||| |||| Sbjct 8428811 TGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGCAAAGTGCGTGTGG 8428870 Query 1538 ACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACA 1597 | || || |||| || || || | | | || || || || ||| | ||| ||||| Sbjct 8428871 ATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATCATGACCAGCAACA 8428930 Query 1598 CCAACATGTGCGCCGTGATTGACGG--GAACAGC-ACCACCTTCGAGCACCAGCAGCCGT 1654 | |||||||| | ||| || || ||| | ||| | ||||||| |||||| Sbjct 8428931 CTGACATGTGCACAGTG---GATGGTAGAATTTCGACCCCGGAGGAGCACCTGCAGCCTC 8428987 Query 1655 TGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGG 1714 | || || || |||||||||||||| || || || ||| ||| ||||||||||| Sbjct 8428988 TCCAAGATCGCATGTTCAAATTTGAGCTGACACGTGCCCTGAAGCCGGACTTTGGCAAAA 8429047 Query 1715 TGACGAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGG 1774 | || || ||||| |||| ||| || ||||| ||||| ||||||| || || ||| Sbjct 8429048 TCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGATCACAGGAGGGAAGTGA 8429107 Query 1775 CGCATGAGTTCTACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCC 1823 | | || |||| ||||| || | || |||| || ||||||||||| Sbjct 8429108 CTGAGGAATTCTTAGTCAGGAAAGTGGGGTCCAGGAAGAGACCCGCCCC 8429156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994029788650