Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq64 378 2e-101 seq77 77.0 9e-11 >seq64 Length=12756018 Score = 378 bits (418), Expect = 2e-101 Identities = 731/1067 (69%), Gaps = 24/1067 (2%) Strand=Plus/Plus Query 665 AACAAGGTGGTGGACGAGTGCTACATCCCCAACTACCTCCTGCCCAAGACTCAGCCCGAG 724 || ||||| || | || | || |||||| |||||| || |||| || || || Sbjct 8428105 AATAAGGTTCTGAATCAGAGTTATATCCCCGCCTACCTTCTAGGAAAGAGCCAACCAGAA 8428164 Query 725 CTGCAGTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCGTGCT-TGAACCTGGCCGA 783 |||||||||||||||| ||||| | ||||| | | ||| | ||| |||| || | || Sbjct 8428165 TTGCAGTGGGCGTGGACCAACATTAAAGAGTACAAACGCGTG-GCTCTGAATCTCTCGGA 8428223 Query 784 GCGCAAACGGCTCGTGGCGCAGCACCTGACCCACGTCAG--CCAGACGCAGGAGCAGAAC 841 ||||| |||| |||| | |||||| || || | || | || | | || | | Sbjct 8428224 ACGCAAGAGGCTGGTGGAGGAGCACCGGATTCAGTTTAGGTCAAGTCTCTCC--CA-AGC 8428280 Query 842 AAGGAGAATCTGAACCCCAATTCTGACGCGCCCGTGATCAGGTCAAAAACCTCCGCGCGC 901 || || |||| || || | | || |||||||| | || | | | Sbjct 8428281 GAGCAGT-TCTGG----CATTTGTAATCCG---GTGATCAGAACTAAGAGGAGCCAAAGA 8428332 Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 961 |||||||| || ||| ||||| ||||| |||||| ||||| || || || ||||| Sbjct 8428333 TATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAACAATGGATG 8428392 Query 962 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1021 |||| ||| | | || | | | ||| || || | |||| | | ||| ||| Sbjct 8428393 GAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGAAGCCAAATC 8428452 Query 1022 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1081 || || |||||||| || | ||| || ||| || | || || || Sbjct 8428453 CGAGCGGCCCTGGACAACACCAGGCAGAAACTGATTTGGACTAAGACAGCTAAAGATTAT 8428512 Query 1082 CTGGTGGGGCCCTCGCTGCCCGCGGA---CATTACCCAGAACCGCATCTACCGCATCCTC 1138 ||||| ||| | ||| || |||| ||| ||||| || || ||||||| ||| || Sbjct 8428513 CTGGTAGGGTCATCGGCCCCTCCGGAAAACATGACCCAAAATCGGATCTACCAGATCTTC 8428572 Query 1139 GCTCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAA 1198 | | || |||||||| || ||||| ||| | | | | || ||| | | Sbjct 8428573 GACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTTGGATGGTGTAGCCAT 8428632 Query 1199 AAGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAAC 1258 | || || ||||| |||||||||||| ||||||| ||||| ||||| || || |||||| Sbjct 8428633 CAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACCAAC 8428692 Query 1259 ATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAG 1318 || || || ||||| |||||||| |||||| ||| ||||| ||||||||||| || ||| Sbjct 8428693 ATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAACTGGACGAACGAG 8428752 Query 1319 AACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATG 1378 |||||||| |||||||| ||| | ||||||||| | |||||||||||||| || | |||| Sbjct 8428753 AACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGGATG 8428812 Query 1379 ACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGAC 1438 || ||||||| ||||| || |||||||||||||| || |||||||| ||||| ||||| Sbjct 8428813 ACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGCAAAGTGCGTGTGGAT 8428872 Query 1439 CAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACC 1498 || || |||| || || || | | | || || || || ||| | ||| |||||| Sbjct 8428873 CAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATCATGACCAGCAACACT 8428932 Query 1499 AACATGTGCGCCGTGATTGACGG--GAACAGC-ACCACCTTCGAGCACCAGCAGCCTCTC 1555 |||||||| | ||| || || ||| | ||| | ||||||| |||||||||| Sbjct 8428933 GACATGTGCACAGTG---GATGGTAGAATTTCGACCCCGGAGGAGCACCTGCAGCCTCTC 8428989 Query 1556 CAGGACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTG 1615 || || || ||||| || || || || || || ||| ||| ||||||||||| | Sbjct 8428990 CAAGATCGCATGTTCAAATTTGAGCTGACACGTGCCCTGAAGCCGGACTTTGGCAAAATC 8429049 Query 1616 ACAAAGCAGGAAGTCAAAGAGTTCTTCCGCTGGGCCAGTGATCACGTGACCGAGGTGGCG 1675 || || ||||| |||| ||| || ||||| ||||| ||||||| || || ||| | Sbjct 8429050 ACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGATCACAGGAGGGAAGTGACT 8429109 Query 1676 CATGAGTTTTACGTCAGAAAGGGCGGAGCCAGCAAAAGACCCGCCCC 1722 | || || | ||||| || | || |||| || ||||||||||| Sbjct 8429110 GAGGAATTCTTAGTCAGGAAAGTGGGGTCCAGGAAGAGACCCGCCCC 8429156 >seq77 Length=11908039 Score = 77.0 bits (84), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 14/233 (6%) Strand=Plus/Minus Query 1208 AAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAA 1267 |||| |||| | |||| |||| || || | | || || || | |||| ||| ||| Sbjct 7031663 AAACAAAACATCCTCTGT-TGTTCGGCCCTGGGATCATGGGAAAAATCAACCTTG-GGAG 7031606 Query 1268 GCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCC 1327 || || |||||||| || |||||||| |||||| ||| |||| | | |||||||| Sbjct 7031605 GCTATTGCCCACGCTGTTCCCTTCTAGGGCTGCCTCAGGCGGACAACTACAGACTTTCCC 7031546 Query 1328 TTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAG 1387 |||| ||| | | ||||||| | | ||| | | |||| |||| | | | Sbjct 7031545 TTCAGTGACCGTCTGGACAAGAAGATCGTCTTATAGAAGGA-GGCAGTAAAAAG------ 7031493 Query 1388 GTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1440 |||| | |||||||||| |||| || |||||| |||||| | ||||||| Sbjct 7031492 ---GTGGGATTCGCCAAGGCCGTTCT-GGGGGCAGCCAGGTGC-CTTGGACCA 7031445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13944511698450