Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq64 251 2e-63 >seq64 Length=12756018 Score = 251 bits (278), Expect = 2e-63 Identities = 569/847 (67%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 898 AGCAAACGCTACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAG 957 ||| || | || ||||| || || | ||||||||||||||||| || ||| | || || Sbjct 8428324 AGCCAAAGATATATGGATCTTGTCAAATGGCTCGTGGAGAAGGGCATTACCTCAGAAAAA 8428383 Query 958 GAATGGCTGCTGGAAAACAGAGAAAGCTTTCGGAGCTTCCAGGCCTCGAGCAACTCGGCG 1017 ||||| || |||| || |||| || | |||||| | || | ||||| | Sbjct 8428384 CAATGGATGGAGGAAGACGAAGAATCTTTCCTGAGCTTTAATGCAACAGGCAACACCAGA 8428443 Query 1018 CGTCAGATCAAGACGGCCCTGCAAGGCGCCATCCAGGAGATGCTTCTGACCAAGACGGCG 1077 | || ||| |||||||| | | ||| ||| | || || ||| ||||| || Sbjct 8428444 AGCCAAATCCGAGCGGCCCTGGACAACACCAGGCAGAAACTGATTTGGACTAAGACAGCT 8428503 Query 1078 GAGGACTACCTCGTCGGAAAAGAA-CCCGTCTCGGACGACGAGATTCGTCAGAACCGCAT 1136 | || || || || || | ||| || |||| || || | | || || || Sbjct 8428504 AAAGATTATCTGGTAGGGTCATCGGCCCCTC-CGGAAAACATGACCC---AAAATCGGAT 8428559 Query 1137 CTACAAGATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGG 1196 |||| |||| || || |||| |||||| ||| |||| || || || |||| || Sbjct 8428560 CTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGGTTGG 8428619 Query 1197 GTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCTGCGACCAC 1256 ||||| | ||| || || |||||||| | ||| |||| || || |||||||| Sbjct 8428620 ATGGTGTAGCCATCAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCAC 8428679 Query 1257 CGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAA 1316 || || |||||||| || ||||| |||||||| || ||||| |||||| || || || Sbjct 8428680 AGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTGTCAA 8428739 Query 1317 CTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATCTGGTGGGA 1376 |||||| |||||||||||||| ||||| |||||| | || |||||||||||||||||||| Sbjct 8428740 CTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGA 8428799 Query 1377 AGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGAGGATCTCG 1436 || || | ||||| |||||||||||||| |||| || || ||||| || || Sbjct 8428800 GGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCAGCAA 8428859 Query 1437 GGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTAT 1496 ||| | ||||| || ||| ||||| |||| | | | | | || || ||||| || Sbjct 8428860 AGTGCGTGTGGATCAGAAAGGCAAATCTTCTGCTGAAGTGGCCCAAACTCCTGTCATCAT 8428919 Query 1497 TACCAGTAACACCAACATGTGTTATGTCATCGACGG--GAA-CACGACTACGTTCGAGCA 1553 ||||| ||||| ||||||| | | || || ||| |||| || ||||| Sbjct 8428920 GACCAGCAACACTGACATGTGCACAG---TGGATGGTAGAATTTCGACCCCGGAGGAGCA 8428976 Query 1554 TAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGTTTACCCGA--- 1610 |||||| | | || | ||||| || | |||| |||| || | || || Sbjct 8428977 CCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGAGC---TGACACG-TGCCCTGAAGC 8429032 Query 1611 -TGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTTCAGGTGGTCCCAGGATC 1669 |||||||| || | |||||||||||||| | | || ||| ||||| | |||| Sbjct 8429033 CGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGCTTCTGATC 8429092 Query 1670 ACCTGACCCCTGTGATCCCAGAATTCCTGGTGCGGAAGGCGGAGTCTCGCAAAAGACCCG 1729 || || |||| |||||| | || |||| | || ||| | || ||||||| Sbjct 8429093 ACAGGAGGGAAGTGACTGAGGAATTCTTAGTCAGGAAAGTGGGGTCCAGGAAGAGACCCG 8429152 Query 1730 CCCCCTC 1736 |||| || Sbjct 8429153 CCCCTTC 8429159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14869239527925