Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq64 255 2e-64 >seq64 Length=12756018 Score = 255 bits (282), Expect = 2e-64 Identities = 376/532 (71%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 1068 GGATCTACCGGCTGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGC 1127 ||||||||| | | || |||||| |||||||| || ||||| |||||| | ||| Sbjct 8428556 GGATCTACCAGATCTTCGACATGAATGGCTACGATCCACTTTACGCTGGCAGCATACTGG 8428615 Query 1128 TCGGCTGGTGCCGCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCA 1187 | || ||||| || || || || || |||||| ||||| | || || || || | Sbjct 8428616 TTGGATGGTGTAGCCATCAATTTGGAAAACGAAACACCATCTGGTTGTTTGGCCCCGCGA 8428675 Query 1188 CGACCGGCAAGACGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCG 1247 | || || || || ||| | || |||||||| |||| |||||||| ||| ||||| | Sbjct 8428676 CCACAGGAAAAACCAACATGGCAGAGGCCATTGCCCACGCGGTGCCCGCCTATGGCTGTG 8428735 Query 1248 TCAACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGT 1307 |||||||||| ||||||||||| || ||||| |||||| | ||||||||||| ||||||| Sbjct 8428736 TCAACTGGACGAACGAGAACTTTCCTTTCAATGACTGCCTTGACAAGATGATTATCTGGT 8428795 Query 1308 GGGAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCA 1367 ||||||| || | |||||| |||||||| || || ||||||||||| || || |||| Sbjct 8428796 GGGAGGAAGGGAGGATGACATCCAAGGTGGTGGAATCGGCCAAGGCCATTCTTGGGGGCA 8428855 Query 1368 GCAAGGTGCGCGTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCC--ACGCCCGT 1425 |||| ||||| || || ||||| |||| | || | || || |||| || || || Sbjct 8428856 GCAAAGTGCGTGTGGATCAGAAAGGCAA-ATCT-TCTGCTGAAGTGGCCCAAACTCCTGT 8428913 Query 1426 CATNNNNNNNNNNNNNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGA 1485 ||| |||||||| || | | | | |||||| || || Sbjct 8428914 CATCATGACCAGCAACACTGACATGTGCACAGTGGATGGTAGAATTTCGACCCCGGAGGA 8428973 Query 1486 GCACCGGCAGCCGCTCGAGGACAGGATGTTCAAGTTCGAGCTCAC-CGTCAGGCTGCAGC 1544 ||||| |||||| ||| | || | |||||||| || ||||| || ||| ||| ||| Sbjct 8428974 GCACCTGCAGCCTCTCCAAGATCGCATGTTCAAATTTGAGCTGACACGT-GCCCTGAAGC 8429032 Query 1545 CCACCTTCGGCAAGATCACCAAGCAGGAGGTGCGCGAGTTCTTTAAGTGGGC 1596 | ||| ||||| |||||||| |||||||| | || || || |||||| Sbjct 8429033 CGGACTTTGGCAAAATCACCAAACAGGAGGTCAGAGACTTTTTCCGGTGGGC 8429084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602138419025