Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_022104.1 Length=5403 Score E Sequences producing significant alignments: (Bits) Value seq64 89.7 2e-14 >seq64 Length=12756018 Score = 89.7 bits (98), Expect = 2e-14 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 1289 AAACGACGCGCTATGTGGTTGTGGGGTCCTGCTAGTACAGGAAAAACCCTCCTCGCAGCA 1348 |||||| | | || ||||||| || || || | |||||||||||| | | |||| Sbjct 8428642 AAACGAAACACCATCTGGTTGTTTGGCCCCGCGACCACAGGAAAAACCAACATGGCAGAG 8428701 Query 1349 GCTATAGCA---GCGGTAGCTCCTTCTTATGGCTGCGTGAATTGGACCAATCAGAACTTT 1405 || || || ||||| || | |||||||| || || ||||| || |||||||| Sbjct 8428702 GCCATTGCCCACGCGGTG---CCCGCCTATGGCTGTGTCAACTGGACGAACGAGAACTTT 8428758 Query 1406 CCATTCAATGACTGTCACTGCCAGTCGCTGGTGTGGTGGGAGGAAGGGAGGATGAC 1461 || ||||||||||| | | || | | | ||||||||||||||||||||||| Sbjct 8428759 CCTTTCAATGACTGCCTTGACAAGATGATTATCTGGTGGGAGGAAGGGAGGATGAC 8428814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17176259476200