Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq312 219 1e-53 seq88 163 9e-37 seq109 118 3e-23 >seq312 Length=1426583 Score = 219 bits (242), Expect = 1e-53 Identities = 263/356 (74%), Gaps = 1/356 (0%) Strand=Plus/Minus Query 1126 AATCCACAAAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGA 1185 |||| | |||| | | ||||||||||||||| ||||| || || ||||| || ||| || Sbjct 1344830 AATCTAATAAAAATATGCCATGCAATAATGTGTTGCCTCAATAAGCAAATAGGTAAATGA 1344771 Query 1186 AATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAG-CCTACTAGCTCAAAAAAT 1244 || || || ||| | ||||| || |||||||| |||| ||| ||||||||||||| Sbjct 1344770 AACACAATTTTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAGCTCAAAAAAT 1344711 Query 1245 AGCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAA 1304 | | ||||||||||| || |||||||| |||| |||| || || || || || Sbjct 1344710 ATGTGAGTTAGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAATTTCCTTTTAA 1344651 Query 1305 TGACTGTGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGT 1364 ||| || | || ||| | |||| |||||||||||||| |||||||| ||||| Sbjct 1344650 TGATTGCTGCAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAGGACAACAAGT 1344591 Query 1365 TAACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGG 1424 ||| || ||||| || || || ||| || || | | ||||||||| ||||| Sbjct 1344590 AAACCAATTTAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAAAAGGAAAAGG 1344531 Query 1425 CAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCA 1480 |||||||| || |||||||||||||| || ||||| | |||||||||||||||| Sbjct 1344530 TAGCAAATCCATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACATCACCA 1344475 >seq88 Length=11899542 Score = 163 bits (180), Expect = 9e-37 Identities = 268/378 (71%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 1126 AATCCACAAAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGA 1185 |||||| | ||||| | || | ||||||||||| || | || ||| | || |||||| Sbjct 366599 AATCCATATAAAGTATGTCACACTATAATGTGCTGTCTATATAAGCAACTAGGAAAAAGA 366658 Query 1186 AATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTC------AA 1239 || || || || || ||| | |||||||| |||||| | | |||| || Sbjct 366659 AACACAATATT-CTACAACAACCAACCAGCACAGGCAAAAGCTTCATTGCTCCCCCCCAA 366717 Query 1240 AAAATAGCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCA 1299 |||||| | || |||||||||| || ||||||||||||| |||| ||| || ||| Sbjct 366718 AAAATATGTGAGTTGGTTGGTAACATAGTCTGCTACAATCCAGCAAATGACAATTTTCCA 366777 Query 1300 TTCAATGACTG-TGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGG-CA 1357 || ||||| || || || ||||| | |||||||||||||||||||| || ||||| || Sbjct 366778 TTTAATGATTGTTGCAACAAAAAATATTATCTGGATAGAAGAAGCAGGAAATCTAGGACA 366837 Query 1358 CTCAAGTTAACTCTTTCAAAGCCATCATG--AGTGGCCAAGCAATCAGACTTGACCAAAA 1415 | || | | | || || || || ||| || ||| |||| | | ||| ||||| || Sbjct 366838 AT-AAATAAGCCAATTTAAGGCAATTATGTCAG-GGCAAAGC-ACAAAACTAGACCAGAA 366894 Query 1416 AGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACAT 1475 ||| |||||||||||||| |||| || ||||| | || |||| | || ||||||| Sbjct 366895 AGGAAAAGGCAGCAAATCCGTTGAGCCCACTCCTATTATTATGATCAGTAACAAAGACAT 366954 Query 1476 CACCAAAGTAATAGTTGG 1493 | ||||| | |||| Sbjct 366955 AATTGTAGTAAGAATTGG 366972 >seq109 Length=10228628 Score = 118 bits (130), Expect = 3e-23 Identities = 282/428 (66%), Gaps = 25/428 (6%) Strand=Plus/Minus Query 1135 AAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATC 1194 |||||| | ||| || |||| ||| | ||||| ||| | || |||||||| || || Sbjct 3858341 AAAGTCACACGTGCCATGATGTACTGTTTAAACAAGCAATTAGGAAAAAGAAACACAATT 3858282 Query 1195 TTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTA 1254 | || | ||||| |||| |||| ||| |||| | |||| ||||||| | || Sbjct 3858281 CTCCTATAAGGACCAGCAAACACAAGAAGAAGCTTCATAGCACAAAAAAATTGTGACTTG 3858222 Query 1255 GTTGGTAACACAGGCTGCTACAATCCA-----AGCAA-----------------TGCC-- 1290 |||||||| || |||||||| ||| || || || Sbjct 3858221 GTTGGTAATGTTGGTTGCTACAACCCAGCTAAAGTAAAAAAAAAAAAAAAAAGTTGAATA 3858162 Query 1291 AACTTCCCATTCAATGACTGTGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAAC 1350 ||||| ||||| ||||| ||| | ||| ||| | ||||| ||||| |||| | | Sbjct 3858161 AACTTTCCATTTAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAAGTGGAGCAG 3858102 Query 1351 CTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGAC 1410 || | ||||| || |||||||| || || || ||||| |||| || ||| Sbjct 3858101 TTATGTCAGCAAGTAGACCAGTTCAAAGCAATAATATCAGGGAAAGCA-TCAGGCTGGAC 3858043 Query 1411 CAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAA 1470 ||||||| || || |||||| | || ||||||||||||||||| ||||| | || ||| Sbjct 3858042 AAAAAAGGAAAGGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACTTCAAAGGAA 3857983 Query 1471 GACATCACCAAAGTAATAGTTGGCACAGAACTCAAAACAGAACACAGACAACCAATAATG 1530 |||| ||||| ||| | ||||| ||| || | ||||||| ||||| | | | Sbjct 3857982 GACACCACCACAGTGAGGATTGGCTGTGAAACCAGGCCTAAACACAGTGAACCAGTTAAG 3857923 Query 1531 GATAGATG 1538 | ||||| Sbjct 3857922 CACAGATG 3857915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15032426791950