Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq312 273 6e-70 seq88 223 1e-54 seq109 190 6e-45 >seq312 Length=1426583 Score = 273 bits (302), Expect = 6e-70 Identities = 270/348 (78%), Gaps = 1/348 (0%) Strand=Plus/Minus Query 1200 AAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATC 1259 ||| ||| |||||||| ||||| || || || || ||||| || ||| |||||||||| Sbjct 1344821 AAAATATGCCATGCAATAATGTGTTGCCTCAATAAGCAAATAGGTAAATGAAACACAATT 1344762 Query 1260 TTACTTTGTGGTCCAGCAAGTACTGGAAAAAG-CCTAATAGCACAAAAAATTGCTCAATT 1318 ||| | || ||||| || || || |||| ||| ||||| |||||||| | | || Sbjct 1344761 TTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAGCTCAAAAAATATGTGAGTT 1344702 Query 1319 GGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAG 1378 ||||||||||| ||||||||||| |||| ||||| || ||||| || || ||||| | Sbjct 1344701 AGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAATTTCCTTTTAATGATTGCTG 1344642 Query 1379 CAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATT 1438 || || ||| | || | |||||||||||||||||| | ||| |||||||||||||| Sbjct 1344641 CAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAGGACAACAAGTAAACCAATT 1344582 Query 1439 TAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAAC 1498 ||||||||| || || ||| || || ||| ||||||||| |||||||||||| | Sbjct 1344581 TAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAAAAGGAAAAGGTAGCAAATC 1344522 Query 1499 CATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAG 1546 ||| ||||||||||||||||||||||| | ||||||||||| || || Sbjct 1344521 CATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACATCACCAG 1344474 Score = 86.0 bits (94), Expect = 2e-13 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 2391 ACTTCAACAACGCAGATAAGACTTTTATAAAAGACACCAACCAAGCAAAAGACTGGGGAG 2450 |||||||||| || || || | |||||| ||||||| ||||| ||| ||||||||||| Sbjct 1343710 ACTTCAACAAAGCTGAGAATAAATTTATACAAGACACTGACCAAACAACAGACTGGGGAG 1343651 Query 2451 GCTGGCTTGGAAACAAATTCTTTAAAATAAAAGAACACAT 2490 ||||| | ||||||||||||| | | |||| | |||| Sbjct 1343650 GCTGGATCAGAAACAAATTCTTCAGAGCAAAAAGATACAT 1343611 >seq88 Length=11899542 Score = 223 bits (246), Expect = 1e-54 Identities = 354/502 (71%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 1191 AACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGA 1250 || ||||| ||||||| ||| | || |||||||||||| | || ||| | || |||||| Sbjct 366599 AATCCATATAAAGTATGTCACACTATAATGTGCTGTCTATATAAGCAACTAGGAAAAAGA 366658 Query 1251 AACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCAC------AA 1304 |||||||| || || ||| | || || || |||||| | || || | || Sbjct 366659 AACACAATATT-CTACAACAACCAACCAGCACAGGCAAAAGCTTCATTGCTCCCCCCCAA 366717 Query 1305 AAAATTGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCA 1364 ||||| | | ||||||||||| ||| |||||||||||| |||| || |||||| Sbjct 366718 AAAATATGTGAGTTGGTTGGTAACATAGTCTGCTACAATCCAGCAAATGACAATTTTCCA 366777 Query 1365 TTCAACGATTGTAGCAACAAAAACC-TAATATGGATAGAAGAAGCAGGAAACTTTGGAAC 1423 || || |||||| |||||||||| | || |||||||||||||||||||| | ||| Sbjct 366778 TTTAATGATTGTTGCAACAAAAAATATTATCTGGATAGAAGAAGCAGGAAATCTAGGACA 366837 Query 1424 TCAAGTAAACCAATTTAAAGCAATCATG--AGTGGCCAAGCAATTAGACTAGACCAAAAA 1481 || ||| ||||||||| ||||| ||| || ||| |||| | | ||||||||| ||| Sbjct 366838 ATAAATAAGCCAATTTAAGGCAATTATGTCAG-GGCAAAGC-ACAAAACTAGACCAGAAA 366895 Query 1482 GGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATA 1541 || ||||| |||||| || | || || ||||| |||| |||| | || |||||||| Sbjct 366896 GGAAAAGGCAGCAAATCCGTTGAGCCCACTCCTATTATTATGATCAGTAACAAAGACATA 366955 Query 1542 ACAAGAGTTGTGGTAGGGTCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGA 1601 | ||| | || | |||| | || || |||||| |||| || | ||||| Sbjct 366956 ATTGTAGTAAGAATTGGATGTGAAATCAGGCCTGAACATGGTGAACCTATTAAACACAGA 367015 Query 1602 TGTATTCGTGTACATCTGACCACAAGACTTCCTGGCGACTTTGGTTTACTTGATGATGAA 1661 | | || ||||| || |||| || | | ||| ||||||||| | || | || Sbjct 367016 TTTGTTAGTGTAAGGCTCACCAAAATATTAGATGGTAGGTTTGGTTTAATAGACAACAAA 367075 Query 1662 GAGATACCAACTATTTTTAAAA 1683 || ||||||| | |||| |||| Sbjct 367076 GAAATACCAAATGTTTTCAAAA 367097 >seq109 Length=10228628 Score = 190 bits (210), Expect = 6e-45 Identities = 303/438 (69%), Gaps = 25/438 (6%) Strand=Plus/Minus Query 1191 AACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGA 1250 |||||| |||||| | ||| ||||||| |||| ||||||| ||| | || |||||| Sbjct 3858350 AACCCAGTCAAAGTCACACGTGCCATGATGTACTGTTTAAACAAGCAATTAGGAAAAAGA 3858291 Query 1251 AACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATT 1310 |||||||| | || | || ||||||| || ||| |||| | ||||||||||||| | Sbjct 3858290 AACACAATTCTCCTATAAGGACCAGCAAACACAAGAAGAAGCTTCATAGCACAAAAAAAT 3858231 Query 1311 GCTCAATTGGTTGGTAATGTAGGATGCTACAATCCA-------------------AGCAA 1351 | | |||||||||||||| || |||||||| ||| | || Sbjct 3858230 TGTGACTTGGTTGGTAATGTTGGTTGCTACAACCCAGCTAAAGTAAAAAAAAAAAAAAAA 3858171 Query 1352 TGTT-----AACTTTCCATTCAACGATTGTAGCAACAAAAACCTAATATGGATAGAAGAA 1406 ||| ||||||||||| || |||||| | | ||| ||| | || || ||||| ||| Sbjct 3858170 AGTTGAATAAACTTTCCATTTAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAA 3858111 Query 1407 GCAGGAAACTTTGGAACTCAAGTAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATT 1466 | | | || | |||||| |||| || |||||||| || || ||||| | Sbjct 3858110 GTGGAGCAGTTATGTCAGCAAGTAGACCAGTTCAAAGCAATAATATCAGGGAAAGCA-TC 3858052 Query 1467 AGACTAGACCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTTATAATGACA 1526 || || ||| ||||||| || || ||||||||||| |||||||||||||| || ||||| Sbjct 3858051 AGGCTGGACAAAAAAGGAAAGGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACT 3857992 Query 1527 ACAAATGAAGACATAACAAGAGTTGTGGTAGGGTCTGAACTTAGACCAGAACATAAACAA 1586 |||| ||||||| || | ||| | | || | |||| || || |||| | || Sbjct 3857991 TCAAAGGAAGACACCACCACAGTGAGGATTGGCTGTGAAACCAGGCCTAAACACAGTGAA 3857932 Query 1587 CCAATCATGGACAGATGT 1604 ||| | | | |||||||| Sbjct 3857931 CCAGTTAAGCACAGATGT 3857914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14648456758950