Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq312 273 6e-70 seq109 214 5e-52 seq88 197 4e-47 >seq312 Length=1426583 Score = 273 bits (302), Expect = 6e-70 Identities = 275/355 (77%), Gaps = 3/355 (1%) Strand=Plus/Minus Query 1299 AATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGA 1358 |||| || |||| ||| |||||||| ||||| || || || || || || || ||| || Sbjct 1344830 AATCTAATAAAAATATGCCATGCAATAATGTGTTGCCTCAATAAGCAAATAGGTAAATGA 1344771 Query 1359 AACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAG--CTTACTAGCACAAAAAA 1416 ||||||||| || | || ||||| || ||||| |||| |||| |||| ||||||| Sbjct 1344770 AACACAATTTTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTA-TAGCTCAAAAAA 1344712 Query 1417 TAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCA 1476 || | |||||||||| ||||| || ||||||||| | | |||||||| ||||| || | Sbjct 1344711 TATGTGAGTTAGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAATTTCCTTTTA 1344652 Query 1477 ATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAG 1536 ||||||| ||| || ||| | || | |||||||||||||||||| | ||| |||| Sbjct 1344651 ATGATTGCTGCAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAGGACAACAAG 1344592 Query 1537 TAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAG 1596 |||||||||| |||||||| || || ||| || || ||| ||||||||| |||| Sbjct 1344591 TAAACCAATTTAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAAAAGGAAAAG 1344532 Query 1597 GCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTAC 1651 | |||||| ||||||||||||||||||| || ||||||| ||||||||||| || Sbjct 1344531 GTAGCAAATCCATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACATCAC 1344477 >seq109 Length=10228628 Score = 214 bits (236), Expect = 5e-52 Identities = 298/418 (71%), Gaps = 25/418 (6%) Strand=Plus/Minus Query 1319 TGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGAAACACAATTCTACTTTGTGG 1378 ||| || |||| |||| ||||||| || | |||||||||||||||||||| || | || Sbjct 3858330 TGCCATGATGTACTGTTTAAACAAGCAATTAGGAAAAAGAAACACAATTCTCCTATAAGG 3858271 Query 1379 TCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCTCAGTTAGTTGGAAATGT 1438 ||||||| ||| ||| |||||| |||||||||||| | | || ||||| ||||| Sbjct 3858270 ACCAGCAAACACAAGAAGAAGCTTCATAGCACAAAAAAATTGTGACTTGGTTGGTAATGT 3858211 Query 1439 AGGTTGCTACAAC---GCTA--GCAA-----------------TG--TAAACTTTCCATT 1474 |||||||||||| |||| | || || ||||||||||||| Sbjct 3858210 TGGTTGCTACAACCCAGCTAAAGTAAAAAAAAAAAAAAAAAGTTGAATAAACTTTCCATT 3858151 Query 1475 CAATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCA 1534 ||||||||| | | ||| ||| | || || ||||| |||| | | || | || Sbjct 3858150 TAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAAGTGGAGCAGTTATGTCAGCA 3858091 Query 1535 AGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAA 1594 |||| |||| ||||||||||| || || || || |||| || ||| ||||||| || Sbjct 3858090 AGTAGACCAGTTCAAAGCAATAATATCAGGGAAAGCA-TCAGGCTGGACAAAAAAGGAAA 3858032 Query 1595 AGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAA 1654 || ||||||||||||||||||||||||||||||||||| |||| ||||||| || | Sbjct 3858031 GGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACTTCAAAGGAAGACACCACCAC 3857972 Query 1655 GGTCGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGT 1712 || | | || | ||| || ||| |||||| ||||| | | | |||||||| Sbjct 3857971 AGTGAGGATTGGCTGTGAAACCAGGCCTAAACACAGTGAACCAGTTAAGCACAGATGT 3857914 >seq88 Length=11899542 Score = 197 bits (218), Expect = 4e-47 Identities = 263/360 (73%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 1299 AATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGA 1358 |||||| | ||||||| ||| | || |||||||||||| | || || | ||||||||| Sbjct 366599 AATCCATATAAAGTATGTCACACTATAATGTGCTGTCTATATAAGCAACTAGGAAAAAGA 366658 Query 1359 AACACAAT--TCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCAC------ 1410 |||||||| ||||| ||| | || ||||| |||||||| | || | Sbjct 366659 AACACAATATTCTACAACAA---CCAACCAGCACAGGCAAAAGCTTCATTGCTCCCCCCC 366715 Query 1411 AAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAA-TGTAAACTTT 1469 |||||||| | |||| ||||| || ||| |||||||| | ||||| || || ||| Sbjct 366716 AAAAAATATGTGAGTTGGTTGGTAACATAGTCTGCTACAATCC-AGCAAATGACAATTTT 366774 Query 1470 CCATTCAATGATTGTAGCAACAAAAACC-TAATATGGATAGAAGAAGCAGGAAACTTTGG 1528 ||||| ||||||||| |||||||||| | || |||||||||||||||||||| | || Sbjct 366775 CCATTTAATGATTGTTGCAACAAAAAATATTATCTGGATAGAAGAAGCAGGAAATCTAGG 366834 Query 1529 AACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAA 1588 | || ||| |||||| || ||||| ||| || ||| | | ||||||||| || Sbjct 366835 ACAATAAATAAGCCAATTTAAGGCAATTATGTCAGGGCAAAGCACAAAACTAGACCAGAA 366894 Query 1589 AGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACAT 1648 ||| |||||||||||| || | || || ||||| | ||||||| || || ||||||| Sbjct 366895 AGGAAAAGGCAGCAAATCCGTTGAGCCCACTCCTATTATTATGATCAGTAACAAAGACAT 366954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14715651514725