Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq312 262 1e-66 seq88 187 8e-44 seq109 179 1e-41 >seq312 Length=1426583 Score = 262 bits (290), Expect = 1e-66 Identities = 342/471 (73%), Gaps = 3/471 (1%) Strand=Plus/Minus Query 1165 AAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATT 1224 ||| ||| ||||||||| ||||| || ||||| || ||||| || ||| ||||||| ||| Sbjct 1344821 AAAATATGCCATGCAATAATGTGTTGCCTCAATAAGCAAATAGGTAAATGAAACACAATT 1344762 Query 1225 CTACTGTGTGGGCCTGCAAGCACTGGCAAAAG-CCTAATAGCACAAAAAATATGCCAACT 1283 || | || || || ||||| || |||| ||| ||||| ||||||||||| | | Sbjct 1344761 TTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAGCTCAAAAAATATGTGAGTT 1344702 Query 1284 GGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAG 1343 |||||||||||||| |||||||| | ||||||||| |||||||| ||||| ||| | Sbjct 1344701 AGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAATTTCCTTTTAATGATTGCTG 1344642 Query 1344 CAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATT 1403 || || |||||| |||| |||||||||| || ||| | ||| |||||||||||||| Sbjct 1344641 CAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAGGACAACAAGTAAACCAATT 1344582 Query 1404 CAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGA 1463 ||| |||| || || ||| || || | | ||||||||||||||| || ||| Sbjct 1344581 TAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAAAAGGAAAAGGTAGCAAATC 1344522 Query 1464 AATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGG 1523 || ||||||||||||| |||||||| | ||||||||||| ||| ||| | | || Sbjct 1344521 CATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACATCACC--AGTGAGAACTGG 1344464 Query 1524 ATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGTAAGAATAGAACT 1583 |||||| ||| | |||| | | || || | | || ||||| | ||| ||| Sbjct 1344463 TTGTGAAATCAGGCTTCAACATAGTGAGCCAATTAAGCGTAGCTGTGTCAATATAAGACT 1344404 Query 1584 CaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGATGGTGAAATCCC 1634 || | ||| | | ||| ||||||||| ||||| ||| ||||| || Sbjct 1344403 CACACAAACTTTGGATGGTAGGTTTGGTTTGATTGAAAATGAGGAAATACC 1344353 >seq88 Length=11899542 Score = 187 bits (206), Expect = 8e-44 Identities = 323/467 (69%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 1156 AATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGA 1215 |||||||| ||||||| || | || ||||||||||| | || ||| | || |||||| Sbjct 366599 AATCCATATAAAGTATGTCACACTATAATGTGCTGTCTATATAAGCAACTAGGAAAAAGA 366658 Query 1216 AACACCAT--TCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCAC------ 1267 ||||| || ||||| || | ||||| ||||||||| | || || | Sbjct 366659 AACACAATATTCTACAACAA---CCAACCAGCACAGGCAAAAGCTTCATTGCTCCCCCCC 366715 Query 1268 AAAAAATATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTC 1327 |||||||||| | |||||||||| | | ||||||||| | |||||| || |||| Sbjct 366716 AAAAAATATGTGAGTTGGTTGGTAACATAGTCTGCTACAATCCAGCAAATGACAATTTTC 366775 Query 1328 CTTTCAATGACTGCAGCAACAAAAA-TATAATCTGGGTAGAAGAAGCTGGCAACTTTGGA 1386 | || ||||| || |||||||||| ||| |||||| |||||||||| || || | ||| Sbjct 366776 CATTTAATGATTGTTGCAACAAAAAATATTATCTGGATAGAAGAAGCAGGAAATCTAGGA 366835 Query 1387 GGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAA 1446 || ||| |||||| || |||| ||| || ||| | | ||| ||||| ||| Sbjct 366836 CAATAAATAAGCCAATTTAAGGCAATTATGTCAGGGCAAAGCACAAAACTAGACCAGAAA 366895 Query 1447 GGAAAAGGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATA 1506 ||||||||||| ||| | | || ||||| | || |||| | || |||||||| Sbjct 366896 GGAAAAGGCAGCAAATCCGTTGAGCCCACTCCTATTATTATGATCAGTAACAAAGACATA 366955 Query 1507 ACCAAAGTAATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGA 1566 | ||||| || ||||||||| ||| || ||||| ||||||| | ||||| Sbjct 366956 ATTGTAGTAAGAATTGGATGTGAAATCAGGCCTGAACATGGTGAACCTATTAAACACAGA 367015 Query 1567 TGTGTAAGAATAGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTT 1613 | ||| || || |||| |||| | || | ||| |||||||| Sbjct 367016 TTTGTTAGTGTAAGGCTCACCAAAATATTAGATGGTAGGTTTGGTTT 367062 >seq109 Length=10228628 Score = 179 bits (198), Expect = 1e-41 Identities = 316/463 (68%), Gaps = 27/463 (6%) Strand=Plus/Minus Query 1176 TGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTGG 1235 ||| || |||| |||| | ||||| ||| | || ||||||||||| ||||| || | || Sbjct 3858330 TGCCATGATGTACTGTTTAAACAAGCAATTAGGAAAAAGAAACACAATTCTCCTATAAGG 3858271 Query 1236 GCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACTGGTTGGTAATGT 1295 || |||| ||| | | |||| | ||||||||||||| || | ||||||||||||| Sbjct 3858270 ACCAGCAAACACAAGAAGAAGCTTCATAGCACAAAAAAATTGTGACTTGGTTGGTAATGT 3858211 Query 1296 TGGTTGCTACAATGCCTCAAATGTAAA------------------------CTTTCCTTT 1331 |||||||||||| | | || ||||| |||||| || Sbjct 3858210 TGGTTGCTACAACCCAGCTAAAGTAAAAAAAAAAAAAAAAAGTTGAATAAACTTTCCATT 3858151 Query 1332 CAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTG-GCAACTTTGGAGGCC 1390 ||||| || | | ||| || || ||||| |||| |||| | ||| | || || Sbjct 3858150 TAATGATTGTTGTAGCAACAACATCATCTGAATAGAGGAAGTGGAGCAGTTATGTCAGC- 3858092 Query 1391 AAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAA 1450 ||||| |||| |||||| |||| || || || || |||| || ||| ||||||||| Sbjct 3858091 AAGTAGACCAGTTCAAAGCAATAATATCAGGGAAAGCA-TCAGGCTGGACAAAAAAGGAA 3858033 Query 1451 AAGGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCA 1510 | || || ||| || ||||||||||||| || |||||| |||| ||||||| |||| Sbjct 3858032 AGGGAAGCAAAACCATAGAACCAACTCCAGTAATTATGACTTCAAAGGAAGACACCACCA 3857973 Query 1511 AAGTAATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTG 1570 ||| | ||| || |||||| || || |||||| |||| | | | ||||||||| Sbjct 3857972 CAGTGAGGATTGGCTGTGAAACCAGGCCTAAACACAGTGAACCAGTTAAGCACAGATGTG 3857913 Query 1571 TAAGAATAGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTT 1613 | ||| ||| | || | | | | ||| | |||||||| Sbjct 3857912 CCAACATAAGACTTACCAAGACATTGGATGGTAAGTTTGGTTT 3857870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15134818800750