Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq312 232 2e-57 seq88 185 3e-43 seq109 174 5e-40 >seq312 Length=1426583 Score = 232 bits (256), Expect = 2e-57 Identities = 261/348 (75%), Gaps = 1/348 (0%) Strand=Plus/Minus Query 1258 AAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATC 1317 ||| | | ||||||||| | |||||||| || || ||| |||| ||| |||||||||| Sbjct 1344821 AAAATATGCCATGCAATAATGTGTTGCCTCAATAAGCAAATAGGTAAATGAAACACAATT 1344762 Query 1318 CTACTATGTGGACCTGCAAGTACAGGCAAAAG-CCTACTAGCACAAGAAATAGCAAAACT 1376 || || ||||| || || ||||| |||| ||| |||| ||| ||||| | | Sbjct 1344761 TTATTACAGGGACCAGCCAGCACAGGGAAAACTCCTTATAGCTCAAAAAATATGTGAGTT 1344702 Query 1377 AGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAG 1436 ||||||||||||||||||||| || || |||| ||| ||||| || ||||| || | Sbjct 1344701 AGTTGGTAATGTTGGATGCTACAACCCAAAAAATGTAAAATTTCCTTTTAATGATTGCTG 1344642 Query 1437 CAACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATT 1496 || || ||| | |||| |||||||||| || ||| | || ||||||||||||||| Sbjct 1344641 CAGCATAAATATTATCTAAATAGAAGAAGCAGGAAACCTAGGACAACAAGTAAACCAATT 1344582 Query 1497 TAAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATC 1556 ||||||||| || || || || || ||| ||||||||| ||||| |||||||| Sbjct 1344581 TAAAGCAATAGTGTCAGGACAAAGCATAAGGTTAGCCCAAAAAGGAAAAGGTAGCAAATC 1344522 Query 1557 AATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAG 1604 || |||||||||||||| || ||||| | |||||||| ||||| || Sbjct 1344521 CATAGAACCAACTCCAGTTATAATGACCAGGAATGAAGACATCACCAG 1344474 >seq88 Length=11899542 Score = 185 bits (204), Expect = 3e-43 Identities = 345/501 (69%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 1249 AATCCATACAAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGA 1308 |||||||| ||||| | || | || | || || || | || |||||||| ||| || Sbjct 366599 AATCCATATAAAGTATGTCACACTATAATGTGCTGTCTATATAAGCAACTAGGAAAAAGA 366658 Query 1309 AACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCAC------AA 1362 |||||||| | ||| ||| | || |||||||||||| | | || | || Sbjct 366659 AACACAATATT-CTACAACAACCAACCAGCACAGGCAAAAGCTTCATTGCTCCCCCCCAA 366717 Query 1363 GAAATAGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCA 1422 ||||| | | |||||||| | | ||||| ||| |||||||| | || |||||| Sbjct 366718 AAAATATGTGAGTTGGTTGGTAACATAGTCTGCTACAATCCAGCAAATGACAATTTTCCA 366777 Query 1423 TTCAATGACTGTAGCAACAAAAACC-TAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGT 1481 || ||||| ||| |||||||||| | |||||| |||||||||| || || | || Sbjct 366778 TTTAATGATTGTTGCAACAAAAAATATTATCTGGATAGAAGAAGCAGGAAATCTAGGACA 366837 Query 1482 ACAAGTAAACCAATTTAAAGCAATTATG--AGTGGCCAGGCAATCAGACTAGACCAAAAA 1539 | || ||| ||||||||| ||||||||| || ||| | ||| | ||||||||| ||| Sbjct 366838 ATAAATAAGCCAATTTAAGGCAATTATGTCAG-GGCAAAGCACAAA-ACTAGACCAGAAA 366895 Query 1540 GGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATC 1599 || |||||||||||||| |||| || ||||| | ||||||| | ||| |||| || Sbjct 366896 GGAAAAGGCAGCAAATCCGTTGAGCCCACTCCTATTATTATGATCAGTAACAAAGACATA 366955 Query 1600 ACAAGAGTCATGGTTGGTTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGA 1659 | ||| | |||| | |||| | | || ||||| ||||||| | ||||| Sbjct 366956 ATTGTAGTAAGAATTGGATGTGAAATCAGGCCTGAACATGGTGAACCTATTAAACACAGA 367015 Query 1660 TGTGTCAGAATCTATCTAAACAATAGACTAAATGGTGACTTTGGTTTGCTTGAACACAAT 1719 | ||| || | || | ||| | | || ||||| |||||||| | || |||| Sbjct 367016 TTTGTTAGTGTAAGGCTCACCAAAATATTAGATGGTAGGTTTGGTTTAATAGACAACAAA 367075 Query 1720 GAAATTCCAAGCATATTCAAA 1740 ||||| |||| | |||||| Sbjct 367076 GAAATACCAAATGTTTTCAAA 367096 >seq109 Length=10228628 Score = 174 bits (192), Expect = 5e-40 Identities = 316/466 (68%), Gaps = 25/466 (5%) Strand=Plus/Minus Query 1288 AACAAACAACTAGGCAAACGAAACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAA 1347 ||||| ||| |||| ||| |||||||||| || |||| ||||| |||| ||| | | | Sbjct 3858311 AACAAGCAATTAGGAAAAAGAAACACAATTCTCCTATAAGGACCAGCAAACACAAGAAGA 3858252 Query 1348 AGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCA 1407 ||| | |||||||| ||| | | |||||||||||||| ||||| || |||| Sbjct 3858251 AGCTTCATAGCACAAAAAAATTGTGACTTGGTTGGTAATGTTGGTTGCTACAACCCAGCT 3858192 Query 1408 AA----------------------TCAA--AACTTTCCATTCAATGACTGTAGCAACAAA 1443 || | || ||||||||||| ||||| ||| | | ||| Sbjct 3858191 AAAGTAAAAAAAAAAAAAAAAAGTTGAATAAACTTTCCATTTAATGATTGTTGTAGCAAC 3858132 Query 1444 AACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCA 1503 ||| | ||||| |||| |||| | | || || |||||| |||| || |||||| Sbjct 3858131 AACATCATCTGAATAGAGGAAGTGGAGCAGTTATGTCAGCAAGTAGACCAGTTCAAAGCA 3858072 Query 1504 ATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAA 1563 || || || | ||| |||| || ||| ||||||| || || |||||| | || ||| Sbjct 3858071 ATAATATCAGGGAAAGCA-TCAGGCTGGACAAAAAAGGAAAGGGAAGCAAAACCATAGAA 3858013 Query 1564 CCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAA 1623 ||||||||||| ||||||||| | || ||||| | ||| | ||| | | |||| | |||| Sbjct 3858012 CCAACTCCAGTAATTATGACTTCAAAGGAAGACACCACCACAGTGAGGATTGGCTGTGAA 3857953 Query 1624 CTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTAAACAAT 1683 | || |||||| |||| | | | ||||||||| || || || | ||| Sbjct 3857952 ACCAGGCCTAAACACAGTGAACCAGTTAAGCACAGATGTGCCAACATAAGACTTACCAAG 3857893 Query 1684 AGACTAAATGGTGACTTTGGTTTGCTTGAACACAATGAAATTCCAA 1729 | | | ||||| | |||||||| | || || || |||||||||| Sbjct 3857892 ACATTGGATGGTAAGTTTGGTTTAATAGACCAAAAAGAAATTCCAA 3857847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14731650266100