Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq10 201 3e-48 >seq10 Length=47997241 Score = 201 bits (222), Expect = 3e-48 Identities = 344/498 (69%), Gaps = 21/498 (4%) Strand=Plus/Minus Query 1302 AACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATA 1361 ||||||| |||| ||||||| |||| || || | | || || ||||||||||| | Sbjct 8295035 AACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCTACT 8294976 Query 1362 GCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAAC 1421 |||| ||| |||| ||| || |||| || ||||| ||||||| ||||||||||| Sbjct 8294975 GCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTCAGG 8294916 Query 1422 GACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTG 1481 | ||| ||||| ||||| |||||||||||||||| |||| ||| |||| ||| ||| Sbjct 8294915 GGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGACGGCCACGGTGGTG 8294856 Query 1482 GAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCC 1541 || | | ||| |||| || | | || ||||||| || | ||||| | |||||| ||| Sbjct 8294855 GACGCCGTCAAGGCCACTCCCAGGGGCGGCAAGGTCCGTGCAGACCAAATATGCAAATCC 8294796 Query 1542 TCGGCCCAGATAGACCCGACTCCCG----------TG--ATCGTCACCTCCAACACCAA- 1588 || || ||| | || |||||||||| || || |||| |||| || | Sbjct 8294795 TCCGCTCAGGTGGAACCGACTCCCGCCGTCGCCGTTGCCGTCATCACTGGCAACGCCGAC 8294736 Query 1589 -----CATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTG 1643 |||| |||| ||| || ||||| | || | || | |||||||||| | | | Sbjct 8294735 ATGGGCATGGGCGCGGTGGCCGATGGGAAGCCGACAAACTCCCAACACCAGCAACGGCTC 8294676 Query 1644 CAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGG-GAAGG- 1701 || |||| || || || ||||||| ||||| ||| || | || |||||| ||| | Sbjct 8294675 CAGGACCAGAGGTCCACGTTTGAACGTACCCGACGTTTGACGCCTGGCTTTGGCGAACGT 8294616 Query 1702 -TCACCAAGCAGGAAGTCAAAGACTTTTTCCGGTGGGCAAAGGATCACGTGGTTGAGGTG 1760 | | || | |||| |||| ||||||||| |||| |||| | || ||| ||| Sbjct 8294615 TTGCCTAAACGAGAAGCCAAAAGCTTTTTCCGTTGGGTTTCCGATCCCATGACTGACGTG 8294556 Query 1761 GAGCATGAATTCTACGTC 1778 | ||| |||| |||| Sbjct 8294555 ACTCTTGAGTTCTTCGTC 8294538 Score = 176 bits (194), Expect = 1e-40 Identities = 271/388 (70%), Gaps = 39/388 (10%) Strand=Plus/Minus Query 2882 ATTGGCATTGCGATTCCACATGGATGGGCGACAGAGTCATCACCACCAGCACCCGAACCT 2941 || |||| || | ||||| ||||||||| ||| ||| ||||| ||||||| Sbjct 8293488 ATGGGCACTGAGGTTCCAAATGGATGGGGAACAC---CATGTCCACC------CGAACCT 8293438 Query 2942 GGGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAGCCAATCAGGA--GC 2999 ||| |||| ||| ||||||||| |||||||| ||||||| ||||| ||||| | || Sbjct 8293437 GGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAATCTCCAGT--ATCAGAACAGC 8293380 Query 3000 CTCGAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTCAACAG 3059 | || | || | | |||| | | ||||||| | |||| || ||| ||||| Sbjct 8293379 CAGAAATGTCAGTGCCCACTTCAGGTGCAGCACCTCCTGGGAATA------CTTGAACAG 8293326 Query 3060 ATTCCACTGCCACTTTTCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATT 3119 ||||||||||||| | || |||||||||||||||||||||||| |||||||| | Sbjct 8293325 GTTCCACTGCCACTGCAGCCTCCGAGACTGGCAAAGACTCATCAACAACCACTGGGGAGT 8293266 Query 3120 CCGACCCAAGAGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGTCACGCAGAA 3179 | | ||||||| ||||| ||| ||||||| || ||||||||||| ||| | Sbjct 8293265 CTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGTCAAAGAAGTC-------A 8293213 Query 3180 TGACGGTACGACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTGTTTACTGACTC 3239 |||| ||||||| ||||| || || ||| || || ||| |||| || Sbjct 8293212 TGAC-------------TTGCCAACAACCTCACGCCCATGGTCCACGTCTTTGCTGATTC 8293166 Query 3240 GGAGTACCAGCTCCCGTACGTCCTCGGC 3267 ||||| ||| |||| ||| | || ||| Sbjct 8293165 TGAGTATCAGGTCCCCTACCTTCTGGGC 8293138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860273207860