Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq10 158 4e-35 >seq10 Length=47997241 Score = 158 bits (174), Expect = 4e-35 Identities = 213/294 (72%), Gaps = 21/294 (7%) Strand=Plus/Minus Query 3106 ATTGGCATTGCGATTCCCAATGGATGGGAAACACAGTCATCACAAAGACCACCAGAACCT 3165 || |||| || | |||| |||||||||| ||||| ||| | ||||| |||||| Sbjct 8293488 ATGGGCACTGAGGTTCCAAATGGATGGGGAACAC---CAT------GTCCACCCGAACCT 8293438 Query 3166 GGGTCCTGCCAAGCTACAACAACCACATCTACAAAGCAATTACCAG---CGGAACCTCTC 3222 |||||||| | ||||||||||| || ||||| || ||| |||| | |||| | Sbjct 8293437 GGGTCCTGTCCAGCTACAACAATTACCTCTACCAACAAATCTCCAGTATCAGAACAGCCA 8293378 Query 3223 AAGATGCAAATGTCCAGTATGCAGGATACAGTACCCCCTGGGGGTACTTTGATTTCAACC 3282 | ||| | || ||| | |||| | ||| ||| |||||| ||||| ||| Sbjct 8293377 GAAATGTCAGTGCCCACTT--CAGG-TGCAGCACCTCCTGGGAATACTTG------AACA 8293327 Query 3283 GCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAGACTTATCAACAACCATTGGGGAA 3342 | ||||||||||||| | || |||||||||| ||||| ||||||||||| |||||| Sbjct 8293326 GGTTCCACTGCCACTGCAGCCTCCGAGACTGGCAAAGACTCATCAACAACCACTGGGGAG 8293267 Query 3343 TCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGTCCAAGTCAAAGAAGTCA 3396 || | |||||| |||| ||| ||| |||| ||| | |||||||||||||||| Sbjct 8293266 TCTGTCCCAAGACTCTCAAAGTCAGAGTCTTTAATATACAAGTCAAAGAAGTCA 8293213 Score = 84.2 bits (92), Expect = 7e-13 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1522 GAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTA 1581 ||||| ||| ||| | | ||||||| ||||| | | || || || || || |||| Sbjct 8295037 GAAACACCACCTGGTTGTTTGGACCTGTGACCACGCGAAGGAGCAGTATCGCGGAGGCTA 8294978 Query 1582 TTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTA 1641 ||||| ||||| |||| |||||| || | || ||||| ||||||| |||||| || | Sbjct 8294977 CTGCCCGTGCTGCTCCCTGCTATGGTTGCGCCAAATGGACAAATGAGATCTTTCCCTTCA 8294918 Query 1642 ATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGAC 1690 | || || || | ||| || ||||||||||||| ||| | ||| Sbjct 8294917 GGGGCTGCGTCGAGCAGATGACCATCTGGTGGGAGGAGGAAAAGAGGAC 8294869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226624771115